The 2.0 version of rSNPBase

Variant report

Variant rs3775317
Chromosome Location chr4:166254174-166254175
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:166249600-166266600 Weak transcription Left Ventricle heart
2 chr4:166249800-166255000 Weak transcription Placenta Placenta
3 chr4:166249800-166262400 Weak transcription Placenta Amnion Placenta Amnion
4 chr4:166249800-166262600 Weak transcription Thymus Thymus
5 chr4:166250000-166254600 Transcr. at gene 5' and 3' H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr4:166250000-166264600 Weak transcription Rectal Smooth Muscle rectum
7 chr4:166250200-166259800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr4:166250200-166260400 Weak transcription Skeletal Muscle Female skeletal muscle
9 chr4:166250200-166260800 Weak transcription Stomach Smooth Muscle stomach
10 chr4:166250200-166262600 Weak transcription Spleen Spleen
11 chr4:166250200-166262800 Weak transcription Right Ventricle heart
12 chr4:166250200-166263800 Weak transcription Colon Smooth Muscle Colon
13 chr4:166250200-166265000 Weak transcription Psoas Muscle Psoas
14 chr4:166250200-166265200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr4:166250400-166255000 Weak transcription Primary monocytes fromperipheralblood blood
16 chr4:166250400-166255000 Weak transcription Primary hematopoietic stem cells blood
17 chr4:166250400-166255200 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr4:166250400-166255400 Weak transcription Primary neutrophils fromperipheralblood blood
19 chr4:166250400-166255800 Transcr. at gene 5' and 3' H9 Derived Neuron Cultured Cells ES cell derived
20 chr4:166250400-166256000 Transcr. at gene 5' and 3' hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr4:166250400-166259600 Weak transcription Fetal Kidney kidney
22 chr4:166250400-166260800 Weak transcription ES-WA7 Cell Line embryonic stem cell
23 chr4:166250400-166260800 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr4:166250400-166262600 Weak transcription Aorta Aorta
25 chr4:166250600-166254600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr4:166250600-166255000 Weak transcription Primary B cells from cord blood blood
27 chr4:166250600-166256200 Weak transcription Pancreatic Islets Pancreatic Islet
28 chr4:166250600-166259800 Weak transcription Adipose Nuclei Adipose
29 chr4:166250600-166259800 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr4:166250600-166263200 Weak transcription Primary T killer memory cells from peripheral blood blood
31 chr4:166250600-166265400 Weak transcription Colonic Mucosa Colon
32 chr4:166250600-166266800 Weak transcription A549 lung
33 chr4:166251000-166254400 Transcr. at gene 5' and 3' Primary hematopoietic stem cells short term culture blood
34 chr4:166251000-166254600 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr4:166251200-166254200 Transcr. at gene 5' and 3' HUES64 Cell Line embryonic stem cell
36 chr4:166251200-166255600 Weak transcription Primary B cells from peripheral blood blood
37 chr4:166251400-166254200 Transcr. at gene 5' and 3' HUES6 Cell Line embryonic stem cell
38 chr4:166251400-166254200 Transcr. at gene 5' and 3' iPS-20b Cell Line embryonic stem cell
39 chr4:166251400-166255000 Weak transcription Primary T regulatory cells fromperipheralblood blood
40 chr4:166251600-166254600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr4:166251800-166254200 Genic enhancers Primary T helper cells fromperipheralblood blood
42 chr4:166251800-166254200 Enhancers Brain Hippocampus Middle brain
43 chr4:166251800-166255000 Active TSS Fetal Brain Female brain
44 chr4:166252000-166254800 Weak transcription Rectal Mucosa Donor 31 rectum
45 chr4:166252000-166255000 Weak transcription Fetal Muscle Trunk muscle
46 chr4:166252000-166259600 Weak transcription Primary T helper naive cells from peripheral blood blood
47 chr4:166252200-166254200 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
48 chr4:166252200-166254200 Transcr. at gene 5' and 3' HUVEC blood vessel
49 chr4:166252200-166260200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
50 chr4:166252200-166269200 Weak transcription Stomach Mucosa stomach

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Last update: Aug 31, 2015