Variant report

Variant	rs12501541
Chromosome Location	chr4:166259161-166259162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166252660..166255076-chr4:166256139..166259452,3	K562	blood:
2	chr4:166251079..166252856-chr4:166258884..166260563,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12498302	0.86[EUR][1000 genomes]
rs12509710	0.85[EUR][1000 genomes]
rs13113058	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1438116	0.90[ASN][1000 genomes]
rs1550270	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1550271	0.93[ASN][1000 genomes]
rs17686529	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1866218	0.93[ASN][1000 genomes]
rs1866219	0.93[ASN][1000 genomes]
rs2118496	0.93[ASN][1000 genomes]
rs2322292	0.93[ASN][1000 genomes]
rs35411578	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3775317	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3775318	0.92[ASN][1000 genomes]
rs62352298	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs756090	0.93[ASN][1000 genomes]
rs7669547	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670057	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7698915	0.93[ASN][1000 genomes]
rs8733	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs934817	0.93[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166249600-166266600	Weak transcription	Left Ventricle	heart
2	chr4:166249800-166262400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:166249800-166262600	Weak transcription	Thymus	Thymus
4	chr4:166250000-166264600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:166250200-166259800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:166250200-166260400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:166250200-166260800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:166250200-166262600	Weak transcription	Spleen	Spleen
9	chr4:166250200-166262800	Weak transcription	Right Ventricle	heart
10	chr4:166250200-166263800	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:166250200-166265000	Weak transcription	Psoas Muscle	Psoas
12	chr4:166250200-166265200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:166250400-166259600	Weak transcription	Fetal Kidney	kidney
14	chr4:166250400-166260800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr4:166250400-166260800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr4:166250400-166262600	Weak transcription	Aorta	Aorta
17	chr4:166250600-166259800	Weak transcription	Adipose Nuclei	Adipose
18	chr4:166250600-166259800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:166250600-166263200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr4:166250600-166265400	Weak transcription	Colonic Mucosa	Colon
21	chr4:166250600-166266800	Weak transcription	A549	lung
22	chr4:166252000-166259600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr4:166252200-166260200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr4:166252200-166269200	Weak transcription	Stomach Mucosa	stomach
25	chr4:166252200-166269400	Weak transcription	Gastric	stomach
26	chr4:166252400-166260400	Weak transcription	Esophagus	oesophagus
27	chr4:166252400-166260400	Weak transcription	Ovary	ovary
28	chr4:166252600-166260200	Weak transcription	Fetal Intestine Small	intestine
29	chr4:166252800-166259600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr4:166253200-166260200	Weak transcription	Fetal Stomach	stomach
31	chr4:166253400-166260200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:166253400-166263000	Weak transcription	Pancreas	Pancrea
33	chr4:166253400-166272600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:166253600-166265400	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr4:166253800-166259600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr4:166253800-166260200	Weak transcription	Lung	lung
37	chr4:166253800-166265200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr4:166253800-166266600	Weak transcription	Small Intestine	intestine
39	chr4:166254000-166259600	Weak transcription	Fetal Lung	lung
40	chr4:166254000-166260200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr4:166254000-166260400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr4:166254000-166260400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr4:166254000-166264600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr4:166254000-166264800	Weak transcription	Hela-S3	cervix
45	chr4:166254000-166265200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr4:166254000-166265200	Strong transcription	NHDF-Ad	bronchial
47	chr4:166254000-166269400	Weak transcription	Fetal Heart	heart
48	chr4:166254200-166261200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr4:166254200-166264200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr4:166254200-166265200	Strong transcription	Fetal Thymus	thymus

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