Variant report

Variant	rs8733
Chromosome Location	chr4:166264119-166264120
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166052131..166053206-chr4:166263833..166265852,12	MCF-7	breast:
2	chr4:166253639..166255171-chr4:166261974..166264196,2	K562	blood:
3	chr4:166262631..166267437-chr4:166267990..166271315,4	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12498302	0.83[EUR][1000 genomes]
rs12501541	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12509710	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12512757	0.80[AMR][1000 genomes]
rs13113058	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1438116	0.88[ASN][1000 genomes]
rs1550270	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1550271	0.84[ASN][1000 genomes]
rs17686529	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1866218	0.84[ASN][1000 genomes]
rs1866219	0.84[ASN][1000 genomes]
rs2118496	0.84[ASN][1000 genomes]
rs2322292	0.84[ASN][1000 genomes]
rs35411578	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3775318	0.84[ASN][1000 genomes]
rs62352298	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs756090	0.84[ASN][1000 genomes]
rs7669547	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7670057	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7690328	0.85[ASN][1000 genomes]
rs7698915	0.84[ASN][1000 genomes]
rs934817	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166249600-166266600	Weak transcription	Left Ventricle	heart
2	chr4:166250000-166264600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:166250200-166265000	Weak transcription	Psoas Muscle	Psoas
4	chr4:166250200-166265200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:166250600-166265400	Weak transcription	Colonic Mucosa	Colon
6	chr4:166250600-166266800	Weak transcription	A549	lung
7	chr4:166252200-166269200	Weak transcription	Stomach Mucosa	stomach
8	chr4:166252200-166269400	Weak transcription	Gastric	stomach
9	chr4:166253400-166272600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:166253600-166265400	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:166253800-166265200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:166253800-166266600	Weak transcription	Small Intestine	intestine
13	chr4:166254000-166264600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:166254000-166264800	Weak transcription	Hela-S3	cervix
15	chr4:166254000-166265200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:166254000-166265200	Strong transcription	NHDF-Ad	bronchial
17	chr4:166254000-166269400	Weak transcription	Fetal Heart	heart
18	chr4:166254200-166264200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:166254200-166265200	Strong transcription	Fetal Thymus	thymus
20	chr4:166254600-166265200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:166254600-166265400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:166254800-166264200	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr4:166255000-166264200	Strong transcription	Fetal Muscle Trunk	muscle
24	chr4:166255000-166264600	Strong transcription	HSMM	muscle
25	chr4:166255600-166265400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr4:166255800-166265200	Strong transcription	Duodenum Mucosa	Duodenum
27	chr4:166255800-166265400	Strong transcription	HUVEC	blood vessel
28	chr4:166255800-166266800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:166256400-166264600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:166256600-166264800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr4:166256600-166265200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr4:166256800-166264200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr4:166256800-166264400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:166256800-166265200	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr4:166256800-166265200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr4:166257000-166265200	Strong transcription	HMEC	breast
37	chr4:166257400-166265400	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr4:166257600-166265200	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr4:166257800-166265200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:166258000-166264200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:166258000-166265200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr4:166258000-166265200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr4:166258200-166265200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr4:166258600-166265600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr4:166258800-166265000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:166258800-166265200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:166258800-166265400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr4:166258800-166265400	Weak transcription	Fetal Muscle Leg	muscle
49	chr4:166259000-166267800	Weak transcription	Fetal Brain Male	brain
50	chr4:166259200-166265400	Strong transcription	Dnd41	blood

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