Variant report

Variant	rs62352298
Chromosome Location	chr4:166265064-166265065
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166052131..166053206-chr4:166263833..166265852,12	MCF-7	breast:
2	chr4:166262631..166267437-chr4:166267990..166271315,4	K562	blood:
3	chr4:166034224..166034823-chr4:166264610..166265422,2	MCF-7	breast:
4	chr4:166265012..166266616-chr4:166301468..166303091,2	K562	blood:
5	chr4:166052186..166053056-chr4:166264613..166265364,4	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12498302	0.83[EUR][1000 genomes]
rs12501541	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12509710	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13113058	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1438116	0.88[ASN][1000 genomes]
rs1550270	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1550271	0.85[ASN][1000 genomes]
rs17686529	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1866218	0.85[ASN][1000 genomes]
rs1866219	0.85[ASN][1000 genomes]
rs2118496	0.85[ASN][1000 genomes]
rs2322292	0.85[ASN][1000 genomes]
rs35411578	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3775318	0.85[ASN][1000 genomes]
rs756090	0.85[ASN][1000 genomes]
rs7669547	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7670057	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7690328	0.86[ASN][1000 genomes]
rs7698915	0.85[ASN][1000 genomes]
rs8733	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs934817	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166249600-166266600	Weak transcription	Left Ventricle	heart
2	chr4:166250200-166265200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:166250600-166265400	Weak transcription	Colonic Mucosa	Colon
4	chr4:166250600-166266800	Weak transcription	A549	lung
5	chr4:166252200-166269200	Weak transcription	Stomach Mucosa	stomach
6	chr4:166252200-166269400	Weak transcription	Gastric	stomach
7	chr4:166253400-166272600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:166253600-166265400	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:166253800-166265200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:166253800-166266600	Weak transcription	Small Intestine	intestine
11	chr4:166254000-166265200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:166254000-166265200	Strong transcription	NHDF-Ad	bronchial
13	chr4:166254000-166269400	Weak transcription	Fetal Heart	heart
14	chr4:166254200-166265200	Strong transcription	Fetal Thymus	thymus
15	chr4:166254600-166265200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:166254600-166265400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:166255600-166265400	Strong transcription	Primary B cells from peripheral blood	blood
18	chr4:166255800-166265200	Strong transcription	Duodenum Mucosa	Duodenum
19	chr4:166255800-166265400	Strong transcription	HUVEC	blood vessel
20	chr4:166255800-166266800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:166256600-166265200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr4:166256800-166265200	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr4:166256800-166265200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr4:166257000-166265200	Strong transcription	HMEC	breast
25	chr4:166257400-166265400	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr4:166257600-166265200	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr4:166257800-166265200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:166258000-166265200	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr4:166258000-166265200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr4:166258200-166265200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr4:166258600-166265600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr4:166258800-166265200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:166258800-166265400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:166258800-166265400	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:166259000-166267800	Weak transcription	Fetal Brain Male	brain
36	chr4:166259200-166265400	Strong transcription	Dnd41	blood
37	chr4:166259400-166265200	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr4:166259800-166265200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:166259800-166266800	Weak transcription	Brain Angular Gyrus	brain
40	chr4:166260600-166265200	Weak transcription	Fetal Intestine Small	intestine
41	chr4:166260600-166265400	Strong transcription	GM12878-XiMat	blood
42	chr4:166260600-166265800	Weak transcription	Lung	lung
43	chr4:166260600-166266600	Weak transcription	Fetal Stomach	stomach
44	chr4:166260600-166268400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr4:166261200-166266200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr4:166261400-166265400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr4:166261400-166267000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr4:166261400-166267000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr4:166261400-166267000	Weak transcription	Ovary	ovary
50	chr4:166261400-166272600	Weak transcription	HSMMtube	muscle

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