Variant report

Variant	rs1550271
Chromosome Location	chr4:166254953-166254954
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166247350..166249646-chr4:166252211..166254955,3	K562	blood:
2	chr4:166128063..166130150-chr4:166253441..166255571,2	MCF-7	breast:
3	chr4:166247158..166249683-chr4:166253375..166256427,3	MCF-7	breast:
4	chr4:166253639..166255171-chr4:166261974..166264196,2	K562	blood:
5	chr4:166252660..166255076-chr4:166256139..166259452,3	K562	blood:
6	chr4:166254481..166256226-chr4:166260007..166262078,2	K562	blood:

Variant related genes	Relation type
ENSG00000170088	Chromatin interaction
ENSG00000052802	Chromatin interaction
ENSG00000109466	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11732637	0.82[EUR][1000 genomes]
rs12501541	0.93[ASN][1000 genomes]
rs1438116	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1550270	0.90[ASN][1000 genomes]
rs17488534	0.81[AFR][1000 genomes]
rs1866218	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866219	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118496	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2322292	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35801858	0.84[EUR][1000 genomes]
rs3775318	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4690810	0.82[EUR][1000 genomes]
rs4691183	0.89[EUR][1000 genomes]
rs4691184	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59447340	0.82[EUR][1000 genomes]
rs62352298	0.85[ASN][1000 genomes]
rs6827255	0.81[EUR][1000 genomes]
rs6827346	0.82[EUR][1000 genomes]
rs6828152	0.81[EUR][1000 genomes]
rs756090	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7667236	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7669547	0.93[ASN][1000 genomes]
rs7670057	0.89[ASN][1000 genomes]
rs7690328	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7698915	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8733	0.84[ASN][1000 genomes]
rs934817	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166249600-166266600	Weak transcription	Left Ventricle	heart
2	chr4:166249800-166255000	Weak transcription	Placenta	Placenta
3	chr4:166249800-166262400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:166249800-166262600	Weak transcription	Thymus	Thymus
5	chr4:166250000-166264600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:166250200-166259800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr4:166250200-166260400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:166250200-166260800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:166250200-166262600	Weak transcription	Spleen	Spleen
10	chr4:166250200-166262800	Weak transcription	Right Ventricle	heart
11	chr4:166250200-166263800	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:166250200-166265000	Weak transcription	Psoas Muscle	Psoas
13	chr4:166250200-166265200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:166250400-166255000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr4:166250400-166255000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr4:166250400-166255200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr4:166250400-166255400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr4:166250400-166255800	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:166250400-166256000	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:166250400-166259600	Weak transcription	Fetal Kidney	kidney
21	chr4:166250400-166260800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr4:166250400-166260800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr4:166250400-166262600	Weak transcription	Aorta	Aorta
24	chr4:166250600-166255000	Weak transcription	Primary B cells from cord blood	blood
25	chr4:166250600-166256200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr4:166250600-166259800	Weak transcription	Adipose Nuclei	Adipose
27	chr4:166250600-166259800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr4:166250600-166263200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr4:166250600-166265400	Weak transcription	Colonic Mucosa	Colon
30	chr4:166250600-166266800	Weak transcription	A549	lung
31	chr4:166251200-166255600	Weak transcription	Primary B cells from peripheral blood	blood
32	chr4:166251400-166255000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr4:166251800-166255000	Active TSS	Fetal Brain Female	brain
34	chr4:166252000-166255000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr4:166252000-166259600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr4:166252200-166260200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr4:166252200-166269200	Weak transcription	Stomach Mucosa	stomach
38	chr4:166252200-166269400	Weak transcription	Gastric	stomach
39	chr4:166252400-166255000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr4:166252400-166260400	Weak transcription	Esophagus	oesophagus
41	chr4:166252400-166260400	Weak transcription	Ovary	ovary
42	chr4:166252600-166260200	Weak transcription	Fetal Intestine Small	intestine
43	chr4:166252800-166255000	Weak transcription	Fetal Muscle Leg	muscle
44	chr4:166252800-166255600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr4:166252800-166259600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr4:166253200-166255000	Weak transcription	Primary T cells from cord blood	blood
47	chr4:166253200-166255000	Weak transcription	HSMM	muscle
48	chr4:166253200-166260200	Weak transcription	Fetal Stomach	stomach
49	chr4:166253400-166257000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
50	chr4:166253400-166260200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links