Variant report

Variant	rs4690810
Chromosome Location	chr4:166280680-166280681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr4:166280563-166281009	K562	blood:	n/a	chr4:166280845-166280852 chr4:166280846-166280857 chr4:166280843-166280855 chr4:166280844-166280853 chr4:166280845-166280853 chr4:166280844-166280854
2	FOS	chr4:166280669-166281041	MCF10A-Er-Src	breast:	n/a	chr4:166280845-166280852 chr4:166280846-166280857 chr4:166280843-166280855 chr4:166280844-166280853 chr4:166280845-166280853 chr4:166280844-166280854
3	E2F4	chr4:166280610-166280926	MCF10A-Er-Src	breast:	n/a	n/a
4	ZNF384	chr4:166280631-166280919	K562	blood:	n/a	n/a
5	FOS	chr4:166280652-166281045	MCF10A-Er-Src	breast:	n/a	chr4:166280845-166280852 chr4:166280846-166280857 chr4:166280843-166280855 chr4:166280844-166280853 chr4:166280845-166280853 chr4:166280844-166280854
6	MYC	chr4:166280678-166281045	MCF10A-Er-Src	breast:	n/a	chr4:166280845-166280854 chr4:166280844-166280853
7	STAT3	chr4:166280662-166281045	MCF10A-Er-Src	breast:	n/a	chr4:166280845-166280854 chr4:166280844-166280853
8	STAT3	chr4:166280676-166281053	MCF10A-Er-Src	breast:	n/a	chr4:166280845-166280854 chr4:166280844-166280853
9	FOS	chr4:166280668-166281041	MCF10A-Er-Src	breast:	n/a	chr4:166280845-166280852 chr4:166280846-166280857 chr4:166280843-166280855 chr4:166280844-166280853 chr4:166280845-166280853 chr4:166280844-166280854
10	FOS	chr4:166280640-166281045	MCF10A-Er-Src	breast:	n/a	chr4:166280845-166280852 chr4:166280846-166280857 chr4:166280843-166280855 chr4:166280844-166280853 chr4:166280845-166280853 chr4:166280844-166280854
11	CEBPB	chr4:166280658-166281047	Hela-S3	cervix:	n/a	chr4:166280856-166280868 chr4:166280790-166280803
12	MYC	chr4:166280678-166281017	MCF10A-Er-Src	breast:	n/a	chr4:166280845-166280854 chr4:166280844-166280853

No.	Distal block	Cell Line	Cell type
1	chr4:166276597..166279121-chr4:166279967..166282162,2	K562	blood:
2	chr4:166279128..166280930-chr4:166292985..166295203,2	K562	blood:
3	chr4:166279563..166282339-chr4:166287037..166289622,2	MCF-7	breast:

Variant related genes	Relation type
CPE	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11732637	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12641145	0.82[JPT][hapmap]
rs1438116	0.86[EUR][1000 genomes]
rs1550271	0.82[EUR][1000 genomes]
rs1866218	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs1866219	0.82[EUR][1000 genomes]
rs2322292	0.84[EUR][1000 genomes]
rs35801858	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3775318	0.85[EUR][1000 genomes]
rs4691183	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4691184	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59447340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827346	0.91[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6827597	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6828152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs756090	0.84[EUR][1000 genomes]
rs7655392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7667236	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7690328	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166277600-166280800	Weak transcription	Fetal Lung	lung
2	chr4:166277600-166285400	Weak transcription	HepG2	liver
3	chr4:166278200-166282800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:166279200-166281800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:166279400-166281200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:166279800-166281600	Enhancers	HMEC	breast
7	chr4:166280200-166281600	Enhancers	HSMMtube	muscle
8	chr4:166280200-166284800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:166280400-166280800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr4:166280400-166281000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:166280400-166281200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:166280400-166281200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:166280400-166281200	Enhancers	NHEK	skin
14	chr4:166280400-166281400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr4:166280400-166281600	Enhancers	Hela-S3	cervix
16	chr4:166280400-166281800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr4:166280400-166282000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:166280400-166282400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:166280600-166281000	Weak transcription	Adipose Nuclei	Adipose
20	chr4:166280600-166281200	Enhancers	HSMM	muscle
21	chr4:166280600-166281400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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