Variant report

Variant	rs7655392
Chromosome Location	chr4:166280502-166280503
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11732637	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12641145	0.82[JPT][hapmap]
rs1438116	0.81[EUR][1000 genomes]
rs1866218	0.82[CEU][hapmap]
rs35801858	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3775318	0.80[EUR][1000 genomes]
rs4690810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4690812	0.81[AMR][1000 genomes]
rs4691183	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs4691184	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59447340	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6827255	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6827346	0.91[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6827597	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6828152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7667236	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs7690328	0.91[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166277600-166280800	Weak transcription	Fetal Lung	lung
2	chr4:166277600-166285400	Weak transcription	HepG2	liver
3	chr4:166278200-166282800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:166279200-166281800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:166279400-166281200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:166279800-166281600	Enhancers	HMEC	breast
7	chr4:166280200-166281600	Enhancers	HSMMtube	muscle
8	chr4:166280200-166284800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:166280400-166280600	Enhancers	Adipose Nuclei	Adipose
10	chr4:166280400-166280800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr4:166280400-166281000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:166280400-166281200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:166280400-166281200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:166280400-166281200	Enhancers	NHEK	skin
15	chr4:166280400-166281400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr4:166280400-166281600	Enhancers	Hela-S3	cervix
17	chr4:166280400-166281800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr4:166280400-166282000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:166280400-166282400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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