Variant report

Variant	rs7690328
Chromosome Location	chr4:166266500-166266501
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166260940..166262583-chr4:166265474..166268224,2	K562	blood:
2	chr4:166249129..166252121-chr4:166265324..166266921,2	K562	blood:
3	chr4:166051363..166053095-chr4:166265302..166266870,2	MCF-7	breast:
4	chr4:166262631..166267437-chr4:166267990..166271315,4	K562	blood:
5	chr4:166052311..166053023-chr4:166265996..166266912,2	MCF-7	breast:
6	chr4:166265012..166266616-chr4:166301468..166303091,2	K562	blood:
7	chr4:166248172..166250457-chr4:166265165..166267668,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000052802	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11732637	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1438116	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1550270	0.90[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1550271	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17686529	0.84[CHD][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1866218	0.85[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1866219	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2118496	0.85[ASN][1000 genomes]
rs2322292	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35801858	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3775318	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4690810	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4691183	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4691184	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59447340	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62352298	0.86[ASN][1000 genomes]
rs6827255	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6827346	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6828152	0.91[CEU][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs756090	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7655392	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs7667236	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7669547	0.85[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap]
rs7670057	0.82[ASN][1000 genomes]
rs7698915	0.85[ASN][1000 genomes]
rs8733	0.85[ASN][1000 genomes]
rs934817	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv2763404	chr4:166265940-166275340	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166249600-166266600	Weak transcription	Left Ventricle	heart
2	chr4:166250600-166266800	Weak transcription	A549	lung
3	chr4:166252200-166269200	Weak transcription	Stomach Mucosa	stomach
4	chr4:166252200-166269400	Weak transcription	Gastric	stomach
5	chr4:166253400-166272600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:166253800-166266600	Weak transcription	Small Intestine	intestine
7	chr4:166254000-166269400	Weak transcription	Fetal Heart	heart
8	chr4:166255800-166266800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:166259000-166267800	Weak transcription	Fetal Brain Male	brain
10	chr4:166259800-166266800	Weak transcription	Brain Angular Gyrus	brain
11	chr4:166260600-166266600	Weak transcription	Fetal Stomach	stomach
12	chr4:166260600-166268400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:166261400-166267000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr4:166261400-166267000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr4:166261400-166267000	Weak transcription	Ovary	ovary
16	chr4:166261400-166272600	Weak transcription	HSMMtube	muscle
17	chr4:166261600-166266600	Weak transcription	Brain Hippocampus Middle	brain
18	chr4:166261600-166266800	Weak transcription	Primary T cells from cord blood	blood
19	chr4:166261600-166266800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr4:166261600-166267000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:166261600-166267400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr4:166261600-166272800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:166261800-166267600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:166261800-166267800	Weak transcription	Brain Germinal Matrix	brain
25	chr4:166262000-166266800	Weak transcription	Fetal Kidney	kidney
26	chr4:166262000-166267200	Weak transcription	NHEK	skin
27	chr4:166262000-166267400	Weak transcription	HepG2	liver
28	chr4:166262000-166268000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr4:166262000-166268200	Weak transcription	Fetal Lung	lung
30	chr4:166262200-166267200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr4:166262400-166266800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr4:166262800-166266800	Weak transcription	Brain Anterior Caudate	brain
33	chr4:166263000-166266800	Weak transcription	Fetal Brain Female	brain
34	chr4:166263200-166266600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr4:166263200-166266800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:166263200-166266800	Weak transcription	Fetal Intestine Large	intestine
37	chr4:166263200-166267000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr4:166263200-166269200	Weak transcription	K562	blood
39	chr4:166263200-166280400	Weak transcription	Adipose Nuclei	Adipose
40	chr4:166263400-166272800	Weak transcription	NH-A	brain
41	chr4:166264000-166266600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:166264000-166267000	Weak transcription	NHLF	lung
43	chr4:166264000-166269000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr4:166264000-166271600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr4:166264000-166274600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr4:166264200-166274800	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr4:166264400-166270200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:166264600-166266800	Weak transcription	HSMM	muscle
49	chr4:166264600-166269000	Weak transcription	Liver	Liver
50	chr4:166265000-166266600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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