Variant report

Variant	rs6828152
Chromosome Location	chr4:166279952-166279953
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166279128..166280930-chr4:166292985..166295203,2	K562	blood:
2	chr4:166279563..166282339-chr4:166287037..166289622,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11732637	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12641145	0.87[JPT][hapmap]
rs1438116	0.85[EUR][1000 genomes]
rs1550271	0.81[EUR][1000 genomes]
rs1866218	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1866219	0.82[EUR][1000 genomes]
rs2322292	0.83[EUR][1000 genomes]
rs35801858	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3775318	0.84[EUR][1000 genomes]
rs4690810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690812	0.80[AMR][1000 genomes]
rs4691183	0.91[CEU][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4691184	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59447340	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827255	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827346	0.91[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6827597	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs756090	0.83[EUR][1000 genomes]
rs7655392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7667236	0.91[CEU][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7690328	0.91[CEU][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6828152	CPE	cis	parietal	SCAN
rs6828152	NPY1R	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166263200-166280400	Weak transcription	Adipose Nuclei	Adipose
2	chr4:166277400-166280400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:166277400-166280400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:166277600-166280800	Weak transcription	Fetal Lung	lung
5	chr4:166277600-166285400	Weak transcription	HepG2	liver
6	chr4:166278200-166282800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr4:166278400-166280400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr4:166279200-166281800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:166279400-166280200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr4:166279400-166281200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:166279600-166280200	Weak transcription	HSMMtube	muscle
12	chr4:166279800-166280000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr4:166279800-166281600	Enhancers	HMEC	breast

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