Variant report

Variant	rs13113058
Chromosome Location	chr4:166275527-166275528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11100606	0.99[ASN][1000 genomes]
rs11732637	0.88[ASN][1000 genomes]
rs11944875	0.83[EUR][1000 genomes]
rs12498302	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501541	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12501589	0.84[AMR][1000 genomes]
rs12502374	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12503472	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12509710	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12512757	0.95[ASN][1000 genomes]
rs12513198	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12641145	0.99[ASN][1000 genomes]
rs12642246	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13113441	0.95[ASN][1000 genomes]
rs13123297	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13151882	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1347744	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1370683	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1438112	0.81[AMR][1000 genomes]
rs17686529	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35411578	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35801858	0.83[ASN][1000 genomes]
rs4691184	0.84[ASN][1000 genomes]
rs62352298	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7669547	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7670057	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8733	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166263200-166280400	Weak transcription	Adipose Nuclei	Adipose
2	chr4:166270000-166276800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:166273200-166276600	Weak transcription	HepG2	liver
4	chr4:166274600-166275600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr4:166275400-166275800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:166275400-166277000	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links