Variant report

Variant	rs13151882
Chromosome Location	chr4:166282183-166282184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr4:166282179-166282433	HepG2	liver:	n/a	chr4:166282316-166282327
2	POLR2A	chr4:166282057-166282226	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr4:166282155-166282481	IMR90	lung:	n/a	chr4:166282316-166282327
4	CEBPB	chr4:166282166-166282473	K562	blood:	n/a	chr4:166282316-166282327

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166279563..166282339-chr4:166287037..166289622,2	MCF-7	breast:

Variant related genes	Relation type
CPE	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11100606	0.81[ASN][1000 genomes]
rs11944875	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12498302	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12501589	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12502374	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12503472	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12509669	0.83[CEU][hapmap]
rs12509710	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12513198	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12641145	0.81[ASN][1000 genomes]
rs12642246	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13113058	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13123297	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13148844	0.84[CEU][hapmap]
rs1347744	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1370683	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1438112	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17624714	0.87[ASN][1000 genomes]
rs17686668	0.87[ASN][1000 genomes]
rs35411578	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4621390	0.85[ASN][1000 genomes]
rs4690812	0.85[ASN][1000 genomes]
rs875486	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166277600-166285400	Weak transcription	HepG2	liver
2	chr4:166278200-166282800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:166280200-166284800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:166280400-166282400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:166281000-166282600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:166281600-166285400	Weak transcription	HMEC	breast
7	chr4:166281600-166285800	Weak transcription	Hela-S3	cervix
8	chr4:166281800-166282800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr4:166281800-166284800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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