Variant report

Variant	rs13148844
Chromosome Location	chr4:166303130-166303131
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:166303010-166303352	HepG2	liver:	n/a	n/a
2	FOXA1	chr4:166303106-166303627	HepG2	liver:	n/a	n/a
3	NR2F2	chr4:166302994-166303649	HepG2	liver:	n/a	n/a
4	RXRA	chr4:166303100-166303485	HepG2	liver:	n/a	n/a
5	ZNF263	chr4:166303009-166303402	HEK293-T-REx	kidney:	n/a	n/a
6	NR2F2	chr4:166302886-166303650	HepG2	liver:	n/a	n/a
7	GATA2	chr4:166302977-166303274	SH-SY5Y	brain:	n/a	chr4:166303134-166303143
8	TEAD4	chr4:166303071-166303641	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:166302928..166304564-chr4:166309546..166311090,2	MCF-7	breast:
2	chr4:166302127..166305075-chr4:166306395..166308343,2	MCF-7	breast:
3	chr4:166301322..166303532-chr4:166346590..166348237,2	MCF-7	breast:
4	chr4:166300805..166303563-chr4:166307690..166309823,2	K562	blood:

Variant related genes	Relation type
MIR578	TF binding region
ENSG00000207559	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10222703	0.86[ASN][1000 genomes]
rs12501589	0.83[CEU][hapmap]
rs12508818	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12509669	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13151882	0.84[CEU][hapmap]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166299200-166303200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:166299400-166304000	Active TSS	Brain Hippocampus Middle	brain
3	chr4:166299600-166304400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr4:166299800-166303200	Active TSS	Brain Anterior Caudate	brain
5	chr4:166300000-166304000	Active TSS	Brain Cingulate Gyrus	brain
6	chr4:166300800-166305000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:166300800-166305000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:166300800-166305000	Weak transcription	HMEC	breast
9	chr4:166301000-166305000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:166301200-166305400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:166301200-166305400	Weak transcription	Esophagus	oesophagus
12	chr4:166301400-166305000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:166301400-166305400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:166301400-166305400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:166301400-166305600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:166301400-166314800	Weak transcription	Fetal Kidney	kidney
17	chr4:166301600-166303800	Weak transcription	Fetal Lung	lung
18	chr4:166301600-166305000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:166301800-166304200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:166302000-166304200	Weak transcription	Fetal Stomach	stomach
21	chr4:166302000-166305800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:166302200-166303200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr4:166302200-166303800	Weak transcription	Aorta	Aorta
24	chr4:166302200-166304000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr4:166302200-166314600	Weak transcription	Brain Substantia Nigra	brain
26	chr4:166302400-166305600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr4:166302400-166306600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:166302600-166303400	Weak transcription	Brain Angular Gyrus	brain
29	chr4:166302600-166304200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:166302600-166305000	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr4:166302600-166306600	Weak transcription	Brain Germinal Matrix	brain
32	chr4:166302800-166303200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr4:166302800-166303200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:166303000-166303200	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr4:166303000-166303200	Enhancers	Pancreas	Pancrea
36	chr4:166303000-166303200	Flanking Active TSS	HepG2	liver
37	chr4:166303000-166303400	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr4:166303000-166303400	Flanking Active TSS	Fetal Brain Female	brain
39	chr4:166303000-166303600	Flanking Active TSS	Fetal Brain Male	brain
40	chr4:166303000-166303800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr4:166303000-166304800	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr4:166303000-166306800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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