Variant report

Variant	rs12509669
Chromosome Location	chr4:166307302-166307303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166298064..166301679-chr4:166306197..166309667,4	MCF-7	breast:
2	chr4:166298593..166300612-chr4:166306180..166307966,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

rs_ID	r²[population]
rs10222703	0.86[ASN][1000 genomes]
rs12501589	0.82[CEU][hapmap]
rs12508818	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13148844	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13151882	0.83[CEU][hapmap]
rs2322291	0.81[CHB][hapmap]
rs4308333	0.81[CHB][hapmap]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166301400-166314800	Weak transcription	Fetal Kidney	kidney
2	chr4:166302200-166314600	Weak transcription	Brain Substantia Nigra	brain
3	chr4:166303200-166307400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:166304000-166311000	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
6	chr4:166305200-166314800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:166305200-166319400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:166305400-166309000	Weak transcription	Aorta	Aorta
9	chr4:166305600-166314200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:166306400-166307600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:166306400-166309600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:166306400-166314200	Weak transcription	Brain Anterior Caudate	brain
14	chr4:166306600-166307600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:166306600-166307600	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr4:166306600-166308200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:166306600-166324800	Weak transcription	Fetal Stomach	stomach
18	chr4:166306800-166307600	Weak transcription	NHDF-Ad	bronchial
19	chr4:166306800-166308200	Weak transcription	Fetal Brain Male	brain
20	chr4:166306800-166309000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr4:166307000-166307400	Weak transcription	Fetal Brain Female	brain
22	chr4:166307000-166314600	Weak transcription	Fetal Lung	lung
23	chr4:166307200-166322200	Weak transcription	HepG2	liver

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