Variant report

Variant	rs2322291
Chromosome Location	chr4:166310679-166310680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10222703	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12509669	0.81[CHB][hapmap]
rs1438110	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1543915	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1866217	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164864	0.83[CHB][hapmap]
rs4308333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691189	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9994574	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2322291	NAF1	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166301400-166314800	Weak transcription	Fetal Kidney	kidney
2	chr4:166302200-166314600	Weak transcription	Brain Substantia Nigra	brain
3	chr4:166304000-166311000	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
5	chr4:166305200-166314800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:166305200-166319400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:166305600-166314200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:166306400-166314200	Weak transcription	Brain Anterior Caudate	brain
10	chr4:166306600-166324800	Weak transcription	Fetal Stomach	stomach
11	chr4:166307000-166314600	Weak transcription	Fetal Lung	lung
12	chr4:166307200-166322200	Weak transcription	HepG2	liver
13	chr4:166308400-166312600	Weak transcription	Fetal Brain Female	brain
14	chr4:166309000-166312200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr4:166309200-166310800	Weak transcription	Fetal Brain Male	brain
16	chr4:166309400-166314600	Weak transcription	Aorta	Aorta
17	chr4:166310000-166310800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr4:166310600-166314800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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