Variant report

Variant	rs1543915
Chromosome Location	chr4:166319702-166319703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166314486..166316368-chr4:166318044..166320457,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10222703	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1438110	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1866217	0.83[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2164864	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2241812	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2322291	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4308333	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4691189	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6837954	0.80[CEU][hapmap]
rs6848504	0.86[EUR][1000 genomes]
rs6849361	0.86[EUR][1000 genomes]
rs7654329	0.81[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap]
rs7699011	0.81[CEU][hapmap]
rs934819	0.83[GIH][hapmap]
rs9994574	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1543915	NAF1	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:166306600-166324800	Weak transcription	Fetal Stomach	stomach
4	chr4:166307200-166322200	Weak transcription	HepG2	liver
5	chr4:166311400-166327400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:166315000-166325200	Weak transcription	Aorta	Aorta
7	chr4:166315800-166328000	Weak transcription	Ovary	ovary
8	chr4:166315800-166332600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:166317600-166322800	Weak transcription	Brain Anterior Caudate	brain
10	chr4:166318200-166330600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:166318600-166323600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr4:166318800-166321800	Enhancers	Fetal Brain Male	brain
13	chr4:166319200-166332000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:166319400-166320200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr4:166319400-166320200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:166319400-166320600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:166319400-166322600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:166319600-166319800	Flanking Active TSS	Fetal Brain Female	brain
19	chr4:166319600-166320000	Enhancers	Brain Hippocampus Middle	brain
20	chr4:166319600-166320000	Enhancers	Brain Substantia Nigra	brain
21	chr4:166319600-166320200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain

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