Variant report

Variant	rs934819
Chromosome Location	chr4:166327010-166327011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10012690	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10015323	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438119	0.83[GIH][hapmap];0.91[MEX][hapmap]
rs1543915	0.83[GIH][hapmap]
rs17624928	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2164864	0.89[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes]
rs2241812	0.83[AMR][1000 genomes]
rs2241813	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241814	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241815	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28530788	0.90[EUR][1000 genomes]
rs4691193	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810964	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6837454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6837954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7654329	0.81[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7699011	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964109	chr4:166325257-166327215	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs934819	DDX60	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:166311400-166327400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:166315800-166328000	Weak transcription	Ovary	ovary
5	chr4:166315800-166332600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:166318200-166330600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:166319200-166332000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:166320000-166339000	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:166320000-166339200	Weak transcription	Brain Substantia Nigra	brain
11	chr4:166320200-166332600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr4:166323600-166330000	Weak transcription	Brain Anterior Caudate	brain
13	chr4:166325200-166327200	Genic enhancers	Fetal Brain Female	brain
14	chr4:166325800-166334600	Weak transcription	Fetal Brain Male	brain
15	chr4:166326000-166339000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:166326200-166331800	Weak transcription	Fetal Stomach	stomach
17	chr4:166326200-166332600	Weak transcription	HepG2	liver
18	chr4:166326400-166338800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:166326600-166328200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:166326600-166337200	Weak transcription	Aorta	Aorta
21	chr4:166326800-166327400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:166326800-166364400	Weak transcription	Brain Germinal Matrix	brain
23	chr4:166327000-166332000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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