Variant report

Variant	rs10012690
Chromosome Location	chr4:166328750-166328751
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr4:166328709-166328777	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
HADHAP1	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10015323	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17624928	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2241813	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2241814	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2241815	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28530788	0.83[EUR][1000 genomes]
rs4691193	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6810964	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6837454	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6837954	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7654329	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7699011	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs934819	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:166315800-166332600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:166318200-166330600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:166319200-166332000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:166320000-166339000	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:166320000-166339200	Weak transcription	Brain Substantia Nigra	brain
9	chr4:166320200-166332600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr4:166323600-166330000	Weak transcription	Brain Anterior Caudate	brain
11	chr4:166325800-166334600	Weak transcription	Fetal Brain Male	brain
12	chr4:166326000-166339000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:166326200-166331800	Weak transcription	Fetal Stomach	stomach
14	chr4:166326200-166332600	Weak transcription	HepG2	liver
15	chr4:166326400-166338800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:166326600-166337200	Weak transcription	Aorta	Aorta
17	chr4:166326800-166364400	Weak transcription	Brain Germinal Matrix	brain
18	chr4:166327000-166332000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:166327200-166334800	Weak transcription	Fetal Brain Female	brain
20	chr4:166327400-166339200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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