Variant report

Variant	rs17624928
Chromosome Location	chr4:166322457-166322458
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166316542..166318609-chr4:166322064..166324233,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10012690	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10015323	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2164864	0.84[AMR][1000 genomes]
rs2241812	0.85[AMR][1000 genomes]
rs2241813	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2241814	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2241815	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28530788	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4691193	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6810964	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6837454	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6837954	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6848504	0.80[AMR][1000 genomes]
rs6849361	0.80[AMR][1000 genomes]
rs7654329	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7699011	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs934819	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:166306600-166324800	Weak transcription	Fetal Stomach	stomach
4	chr4:166311400-166327400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:166315000-166325200	Weak transcription	Aorta	Aorta
6	chr4:166315800-166328000	Weak transcription	Ovary	ovary
7	chr4:166315800-166332600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:166317600-166322800	Weak transcription	Brain Anterior Caudate	brain
9	chr4:166318200-166330600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:166318600-166323600	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr4:166319200-166332000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:166319400-166322600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:166320000-166339000	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:166320000-166339200	Weak transcription	Brain Substantia Nigra	brain
16	chr4:166320200-166325200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:166320200-166325600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:166320200-166332600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr4:166321800-166323400	Weak transcription	Fetal Brain Male	brain
20	chr4:166322000-166322600	Weak transcription	Fetal Brain Female	brain
21	chr4:166322200-166322800	Strong transcription	HepG2	liver

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