Variant report

Variant	rs2241812
Chromosome Location	chr4:166325868-166325869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166324892..166326532-chr4:166339338..166341206,2	K562	blood:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10015323	0.83[AMR][1000 genomes]
rs1543915	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17624928	0.85[AMR][1000 genomes]
rs2164864	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2241813	0.83[AMR][1000 genomes]
rs2241815	0.83[AMR][1000 genomes]
rs4691193	0.83[AMR][1000 genomes]
rs6833833	0.82[AMR][1000 genomes]
rs6837454	0.83[AMR][1000 genomes]
rs6837954	0.83[AMR][1000 genomes]
rs6848504	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6849361	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7654329	0.84[AMR][1000 genomes]
rs7699011	0.83[AMR][1000 genomes]
rs934819	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964109	chr4:166325257-166327215	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:166311400-166327400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:166315800-166328000	Weak transcription	Ovary	ovary
5	chr4:166315800-166332600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:166318200-166330600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:166319200-166332000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:166320000-166339000	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:166320000-166339200	Weak transcription	Brain Substantia Nigra	brain
11	chr4:166320200-166332600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr4:166322800-166327000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:166323200-166326000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:166323400-166326200	Strong transcription	HepG2	liver
15	chr4:166323600-166330000	Weak transcription	Brain Anterior Caudate	brain
16	chr4:166324400-166326800	Weak transcription	Fetal Intestine Small	intestine
17	chr4:166324800-166326200	Strong transcription	Fetal Stomach	stomach
18	chr4:166325200-166326200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:166325200-166326600	Strong transcription	Aorta	Aorta
20	chr4:166325200-166327000	Strong transcription	Pancreatic Islets	Pancreatic Islet
21	chr4:166325200-166327200	Genic enhancers	Fetal Brain Female	brain
22	chr4:166325600-166326000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:166325600-166326400	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr4:166325600-166326600	Strong transcription	Fetal Muscle Trunk	muscle
25	chr4:166325800-166326800	Strong transcription	Brain Germinal Matrix	brain
26	chr4:166325800-166334600	Weak transcription	Fetal Brain Male	brain

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