Variant report

Variant	rs1438119
Chromosome Location	chr4:166348346-166348347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1438114	0.82[CEU][hapmap];0.85[GIH][hapmap]
rs1438120	0.89[CEU][hapmap];0.86[AMR][1000 genomes]
rs35394221	0.87[AMR][1000 genomes]
rs3857014	0.83[GIH][hapmap]
rs4691196	0.83[GIH][hapmap]
rs6835701	0.89[CEU][hapmap]
rs7654329	0.83[GIH][hapmap];0.82[JPT][hapmap]
rs7692208	0.83[GIH][hapmap]
rs7699011	0.91[JPT][hapmap]
rs934819	0.83[GIH][hapmap];0.91[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv819783	chr4:166343301-166352070	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv822820	chr4:166343402-166351961	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1438119	P2RY6	trans	parietal	SCAN
rs1438119	NPY5R	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:166326800-166364400	Weak transcription	Brain Germinal Matrix	brain
3	chr4:166340000-166358800	Weak transcription	Fetal Brain Female	brain
4	chr4:166342800-166360000	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:166342800-166364000	Weak transcription	HepG2	liver
6	chr4:166343000-166358200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:166346600-166350400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:166347400-166360800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:166347600-166351000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
10	chr4:166348000-166348400	ZNF genes & repeats	Brain Anterior Caudate	brain
11	chr4:166348000-166348400	ZNF genes & repeats	Pancreas	Pancrea
12	chr4:166348200-166348400	ZNF genes & repeats	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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