Variant report

Variant	rs3857014
Chromosome Location	chr4:166362221-166362222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166361690..166363243-chr4:166374413..166376065,2	MCF-7	breast:
2	chr4:166353322..166356417-chr4:166360672..166362534,3	MCF-7	breast:
3	chr4:166341842..166344662-chr4:166361837..166363651,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13137743	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1370690	0.96[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1438114	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438119	0.83[GIH][hapmap]
rs1438120	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1438121	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1837173	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35394221	0.91[ASN][1000 genomes]
rs4691196	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6536914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6833833	0.90[ASN][1000 genomes]
rs6835701	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7692208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3857014	NPY1R	cis	parietal	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166326800-166364400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:166342800-166364000	Weak transcription	HepG2	liver
3	chr4:166352600-166366400	Weak transcription	Pancreas	Pancrea
4	chr4:166359400-166362600	Enhancers	Fetal Brain Female	brain
5	chr4:166359800-166362600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:166359800-166363000	Enhancers	Fetal Brain Male	brain
7	chr4:166360000-166362400	Enhancers	Brain Hippocampus Middle	brain
8	chr4:166360000-166365400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:166360200-166363000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:166360800-166363000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:166361000-166362400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:166361000-166362400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:166361000-166362400	Enhancers	Brain Angular Gyrus	brain
14	chr4:166361200-166362400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:166361200-166362400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:166361200-166362800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr4:166361400-166362600	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr4:166361600-166362800	Enhancers	Placenta	Placenta
19	chr4:166361800-166362400	Enhancers	Aorta	Aorta
20	chr4:166361800-166362400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr4:166361800-166362400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:166361800-166375200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:166362000-166362400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr4:166362000-166362400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr4:166362000-166362400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:166362000-166362400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:166362000-166362400	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr4:166362000-166362400	Enhancers	HMEC	breast
29	chr4:166362000-166362600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:166362000-166362800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr4:166362200-166362400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:166362200-166362400	Enhancers	Brain Cingulate Gyrus	brain
33	chr4:166362200-166362400	Enhancers	Brain Substantia Nigra	brain
34	chr4:166362200-166362400	Enhancers	Stomach Smooth Muscle	stomach
35	chr4:166362200-166362600	Enhancers	Hela-S3	cervix
36	chr4:166362200-166381600	Weak transcription	Fetal Stomach	stomach

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