Variant report

Variant	rs7692208
Chromosome Location	chr4:166358437-166358438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166353654..166355790-chr4:166357713..166360539,2	MCF-7	breast:
2	chr4:166299323..166300880-chr4:166357124..166358798,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13137743	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1370690	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1438114	0.84[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1438119	0.83[GIH][hapmap]
rs1438120	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1438121	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1837173	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35394221	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3857014	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4691196	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6536914	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6822471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6833833	0.93[ASN][1000 genomes]
rs6835701	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7692208	NPY1R	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:166326800-166364400	Weak transcription	Brain Germinal Matrix	brain
3	chr4:166340000-166358800	Weak transcription	Fetal Brain Female	brain
4	chr4:166342800-166360000	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:166342800-166364000	Weak transcription	HepG2	liver
6	chr4:166347400-166360800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:166348400-166361800	Weak transcription	Aorta	Aorta
8	chr4:166350400-166359400	Weak transcription	Brain Anterior Caudate	brain
9	chr4:166351000-166359400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:166352600-166361000	Weak transcription	Brain Angular Gyrus	brain
11	chr4:166352600-166366400	Weak transcription	Pancreas	Pancrea
12	chr4:166353200-166359200	Weak transcription	Fetal Brain Male	brain
13	chr4:166353400-166360800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:166355800-166360600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:166356400-166360800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:166356600-166361200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:166358200-166358600	Enhancers	Brain Substantia Nigra	brain
18	chr4:166358200-166358800	Enhancers	Brain Cingulate Gyrus	brain
19	chr4:166358200-166359000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:166358400-166358600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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