Variant report

Variant	rs6822471
Chromosome Location	chr4:166354402-166354403
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13137743	0.80[AMR][1000 genomes]
rs1370690	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1438114	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1438120	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1438121	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1837173	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35394221	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3857014	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4691196	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6536914	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6833833	0.97[ASN][1000 genomes]
rs6835701	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7692208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:166326800-166364400	Weak transcription	Brain Germinal Matrix	brain
3	chr4:166340000-166358800	Weak transcription	Fetal Brain Female	brain
4	chr4:166342800-166360000	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:166342800-166364000	Weak transcription	HepG2	liver
6	chr4:166343000-166358200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:166347400-166360800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:166348400-166361800	Weak transcription	Aorta	Aorta
9	chr4:166350400-166359400	Weak transcription	Brain Anterior Caudate	brain
10	chr4:166351000-166359400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:166351600-166355000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:166352600-166361000	Weak transcription	Brain Angular Gyrus	brain
13	chr4:166352600-166366400	Weak transcription	Pancreas	Pancrea
14	chr4:166353200-166359200	Weak transcription	Fetal Brain Male	brain
15	chr4:166353400-166360800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:166354000-166354600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr4:166354200-166355800	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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