Variant report

Variant	rs17686668
Chromosome Location	chr4:166285836-166285837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11732637	0.81[ASN][1000 genomes]
rs11944875	0.85[ASN][1000 genomes]
rs12501589	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs12502374	0.88[ASN][1000 genomes]
rs12503472	0.87[ASN][1000 genomes]
rs12513198	0.82[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12642246	0.89[ASN][1000 genomes]
rs13113441	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13123297	0.87[ASN][1000 genomes]
rs13151882	0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1347744	0.89[ASN][1000 genomes]
rs1370683	0.88[ASN][1000 genomes]
rs1438112	0.86[ASN][1000 genomes]
rs17624714	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4621390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4690812	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6827346	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs6827597	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166282600-166290800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:166282800-166286000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:166283600-166288600	Enhancers	Fetal Intestine Large	intestine
4	chr4:166284400-166287600	Enhancers	Fetal Intestine Small	intestine
5	chr4:166284800-166286000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:166284800-166286000	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr4:166284800-166286800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:166285000-166286000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr4:166285400-166286800	Enhancers	HMEC	breast
10	chr4:166285400-166290000	Enhancers	HepG2	liver
11	chr4:166285600-166286400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr4:166285600-166286600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:166285800-166286000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:166285800-166286400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr4:166285800-166286400	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr4:166285800-166286600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr4:166285800-166286600	Enhancers	H9 Cell Line	embryonic stem cell
18	chr4:166285800-166286600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr4:166285800-166286800	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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