Variant report

Variant	rs17624714
Chromosome Location	chr4:166284519-166284520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11732637	0.81[ASN][1000 genomes]
rs11944875	0.85[ASN][1000 genomes]
rs12501589	0.87[ASN][1000 genomes]
rs12502374	0.88[ASN][1000 genomes]
rs12503472	0.87[ASN][1000 genomes]
rs12513198	0.83[ASN][1000 genomes]
rs12642246	0.89[ASN][1000 genomes]
rs13113441	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13123297	0.87[ASN][1000 genomes]
rs13151882	0.87[ASN][1000 genomes]
rs1347744	0.89[ASN][1000 genomes]
rs1370683	0.88[ASN][1000 genomes]
rs1438112	0.86[ASN][1000 genomes]
rs17686668	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4621390	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4690812	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6827346	0.82[ASN][1000 genomes]
rs6827597	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166277600-166285400	Weak transcription	HepG2	liver
2	chr4:166280200-166284800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:166281600-166285400	Weak transcription	HMEC	breast
4	chr4:166281600-166285800	Weak transcription	Hela-S3	cervix
5	chr4:166281800-166284800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:166282600-166290800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:166282800-166286000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:166283600-166288600	Enhancers	Fetal Intestine Large	intestine
9	chr4:166284400-166284600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:166284400-166287600	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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