Variant report

Variant	rs12509710
Chromosome Location	chr4:166277317-166277318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166276683..166277608-chr4:166385622..166387104,5	MCF-7	breast:
2	chr4:166277287..166279356-chr4:166299374..166301924,3	MCF-7	breast:
3	chr4:166276597..166279121-chr4:166279967..166282162,2	K562	blood:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11100606	0.99[ASN][1000 genomes]
rs11732637	0.88[ASN][1000 genomes]
rs11944875	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12498302	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12501541	0.85[EUR][1000 genomes]
rs12501589	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12502374	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12503472	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12512757	0.94[ASN][1000 genomes]
rs12513198	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12641145	0.99[ASN][1000 genomes]
rs12642246	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13113058	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13113441	0.94[ASN][1000 genomes]
rs13123297	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13151882	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1347744	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1370683	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1438112	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17686529	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35411578	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35801858	0.84[ASN][1000 genomes]
rs4691184	0.83[ASN][1000 genomes]
rs62352298	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7669547	0.85[EUR][1000 genomes]
rs7670057	0.85[EUR][1000 genomes]
rs8733	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166263200-166280400	Weak transcription	Adipose Nuclei	Adipose
2	chr4:166276600-166277600	Enhancers	HepG2	liver
3	chr4:166276800-166277400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:166276800-166277400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:166277000-166277400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr4:166277000-166277800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr4:166277200-166277400	Enhancers	Primary B cells from peripheral blood	blood
8	chr4:166277200-166277400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr4:166277200-166277400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr4:166277200-166277800	Enhancers	Pancreatic Islets	Pancreatic Islet

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