Variant report

Variant	rs377576384
Chromosome Location	chr6:25137281-25137282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr6:25137269-25137405	MCF10A-Er-Src	breast:	n/a	n/a
2	MAZ	chr6:25137248-25137429	GM12878	blood:	n/a	n/a
3	STAT1	chr6:25136856-25137522	Hela-S3	cervix:	n/a	chr6:25137266-25137280 chr6:25137267-25137278
4	REST	chr6:25137172-25137479	SK-N-SH	brain:	n/a	n/a
5	STAT3	chr6:25137120-25137448	MCF10A-Er-Src	breast:	n/a	chr6:25137266-25137280 chr6:25137267-25137278
6	POLR2A	chr6:25136835-25139403	GM12891	blood:	n/a	n/a
7	CTCF	chr6:25137260-25137410	AG10803	skin:	n/a	n/a
8	POLR2A	chr6:25136992-25139613	MCF10A-Er-Src	breast:	n/a	n/a
9	GATA1	chr6:25136718-25138791	PBDE	blood:	n/a	chr6:25137782-25137792
10	MAX	chr6:25137075-25137421	NB4	blood:	n/a	n/a
11	REST	chr6:25137245-25137424	Hela-S3	cervix:	n/a	n/a
12	FOS	chr6:25137205-25137409	MCF10A-Er-Src	breast:	n/a	n/a
13	POLR2A	chr6:25136994-25139133	GM19099	blood:	n/a	n/a
14	STAT3	chr6:25137133-25137401	MCF10A-Er-Src	breast:	n/a	chr6:25137266-25137280 chr6:25137267-25137278
15	STAT3	chr6:25137202-25137410	MCF10A-Er-Src	breast:	n/a	chr6:25137266-25137280 chr6:25137267-25137278

Variant related genes	Relation type
ENSG00000219682	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv830611	chr6:25039374-25199112	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv470806	chr6:25082262-25156197	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv462662	chr6:25084718-25165486	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv601166	chr6:25084718-25165486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv1798120	chr6:25136860-25149538	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1025694	chr6:25136860-25309450	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25123800-25138400	Weak transcription	Pancreas	Pancrea
2	chr6:25124400-25138200	Weak transcription	Spleen	Spleen
3	chr6:25133800-25138000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:25135200-25140200	Active TSS	Right Atrium	heart
5	chr6:25135400-25138200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:25136000-25137600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr6:25136000-25137800	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr6:25136000-25138800	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr6:25136000-25139800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:25136200-25137400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
11	chr6:25136200-25137400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
12	chr6:25136200-25137400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr6:25136200-25137400	Flanking Active TSS	Stomach Smooth Muscle	stomach
14	chr6:25136200-25139000	Active TSS	Left Ventricle	heart
15	chr6:25136200-25139600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr6:25136200-25139800	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr6:25136200-25140000	Active TSS	Aorta	Aorta
18	chr6:25136400-25137600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:25136400-25138200	Active TSS	Rectal Mucosa Donor 31	rectum
20	chr6:25136400-25139200	Enhancers	Placenta Amnion	Placenta Amnion
21	chr6:25136400-25139400	Active TSS	Brain Hippocampus Middle	brain
22	chr6:25136600-25137400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr6:25136600-25137400	Transcr. at gene 5' and 3'	Thymus	Thymus
24	chr6:25136600-25137800	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr6:25136600-25138000	Transcr. at gene 5' and 3'	Dnd41	blood
26	chr6:25136600-25139400	Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr6:25136600-25139600	Active TSS	Duodenum Mucosa	Duodenum
28	chr6:25136600-25140000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:25136800-25137400	Enhancers	Primary B cells from cord blood	blood
30	chr6:25136800-25137400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:25136800-25137400	Flanking Active TSS	Colon Smooth Muscle	Colon
32	chr6:25136800-25137400	Flanking Active TSS	GM12878-XiMat	blood
33	chr6:25136800-25137400	Flanking Active TSS	NHDF-Ad	bronchial
34	chr6:25136800-25137600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:25136800-25137600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:25136800-25137600	Enhancers	Fetal Heart	heart
37	chr6:25136800-25137800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:25136800-25137800	Enhancers	Hela-S3	cervix
39	chr6:25136800-25138000	Enhancers	Muscle Satellite Cultured Cells	--
40	chr6:25136800-25138000	Genic enhancers	Placenta	Placenta
41	chr6:25136800-25138200	Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr6:25136800-25138400	Flanking Active TSS	Primary T cells from cord blood	blood
43	chr6:25136800-25138400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr6:25136800-25138800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:25136800-25138800	Active TSS	Sigmoid Colon	Sigmoid Colon
46	chr6:25136800-25139000	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr6:25136800-25139000	Flanking Active TSS	Liver	Liver
48	chr6:25136800-25139000	Flanking Active TSS	Osteobl	bone
49	chr6:25136800-25139400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr6:25136800-25139400	Active TSS	Brain Anterior Caudate	brain

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