Variant report

Variant	rs3775832
Chromosome Location	chr4:20599362-20599363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10010466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563657	0.87[CEU][hapmap]
rs4697169	0.83[CEU][hapmap]
rs6820674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826108	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7660834	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20492000-20599800	Weak transcription	Aorta	Aorta
2	chr4:20536800-20618600	Weak transcription	Spleen	Spleen
3	chr4:20567000-20604000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:20567200-20605200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:20567200-20617000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:20578000-20617400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:20578200-20616800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:20578400-20610000	Weak transcription	Fetal Brain Male	brain
9	chr4:20579400-20605600	Weak transcription	Adipose Nuclei	Adipose
10	chr4:20584200-20600200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:20589200-20610600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:20589200-20620800	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:20590000-20620400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr4:20590800-20618400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:20591400-20617000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:20591600-20605200	Weak transcription	NHEK	skin
17	chr4:20593000-20619000	Weak transcription	Placenta	Placenta
18	chr4:20594400-20619000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:20594600-20600000	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:20594600-20601600	Strong transcription	Fetal Lung	lung
21	chr4:20594600-20602600	Weak transcription	Fetal Intestine Large	intestine
22	chr4:20594600-20605200	Weak transcription	NHLF	lung
23	chr4:20594800-20599800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:20594800-20603800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:20594800-20620600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr4:20595000-20605400	Strong transcription	NHDF-Ad	bronchial
27	chr4:20595600-20601600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:20595800-20604800	Weak transcription	Brain Anterior Caudate	brain
29	chr4:20596200-20600800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr4:20596400-20601600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr4:20596600-20600200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr4:20596800-20605200	Weak transcription	HUVEC	blood vessel
33	chr4:20597200-20600800	Strong transcription	Osteobl	bone
34	chr4:20597600-20599800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr4:20597800-20624600	Weak transcription	Brain Hippocampus Middle	brain
36	chr4:20598400-20599600	Weak transcription	Fetal Kidney	kidney
37	chr4:20598400-20605400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:20598400-20615000	Weak transcription	Fetal Stomach	stomach
39	chr4:20598600-20601000	Weak transcription	Brain Substantia Nigra	brain
40	chr4:20598600-20619200	Weak transcription	Ovary	ovary
41	chr4:20599200-20600600	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:20599200-20601400	Weak transcription	Lung	lung

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