Variant report

Variant	rs4697169
Chromosome Location	chr4:20552853-20552854
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10010466	0.81[CEU][hapmap]
rs10938800	0.83[EUR][1000 genomes]
rs11732845	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11732980	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11737654	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11936468	0.82[JPT][hapmap]
rs1457919	0.95[CEU][hapmap];0.82[CHB][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1563657	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1870261	0.83[ASN][1000 genomes]
rs2168802	0.81[CHB][hapmap]
rs2292439	0.83[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3775827	0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs3775832	0.83[CEU][hapmap]
rs504754	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs506358	0.95[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs571433	0.95[CEU][hapmap];0.83[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs575088	0.96[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs587883	0.96[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs606524	0.81[JPT][hapmap]
rs636798	1.00[JPT][hapmap]
rs6820674	0.83[CEU][hapmap]
rs6827219	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs6829152	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7692811	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases
2	nsv999482	chr4:20546216-20563747	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1007227	chr4:20547578-20563930	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv516999	chr4:20548976-20565861	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3692811	chr4:20552510-20565861	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20492000-20599800	Weak transcription	Aorta	Aorta
2	chr4:20511800-20576200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:20519400-20571000	Weak transcription	Adipose Nuclei	Adipose
4	chr4:20524200-20555200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:20525200-20555400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:20530400-20555400	Weak transcription	NHEK	skin
7	chr4:20533000-20578000	Weak transcription	NHLF	lung
8	chr4:20533800-20576200	Weak transcription	Left Ventricle	heart
9	chr4:20534800-20576400	Weak transcription	Fetal Brain Male	brain
10	chr4:20535800-20593600	Weak transcription	Fetal Kidney	kidney
11	chr4:20536000-20554800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr4:20536000-20555200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr4:20536600-20572200	Weak transcription	Placenta	Placenta
14	chr4:20536800-20618600	Weak transcription	Spleen	Spleen
15	chr4:20538000-20553200	Weak transcription	Fetal Stomach	stomach
16	chr4:20547000-20576000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:20549200-20568800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:20550000-20561400	Strong transcription	NHDF-Ad	bronchial
19	chr4:20550400-20561000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:20550800-20553400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:20552000-20554800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr4:20552000-20557600	Strong transcription	Fetal Lung	lung
23	chr4:20552400-20553000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:20552400-20553400	Strong transcription	Placenta Amnion	Placenta Amnion
25	chr4:20552400-20555400	Strong transcription	Osteobl	bone
26	chr4:20552400-20561000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr4:20552600-20553600	Strong transcription	Colon Smooth Muscle	Colon
28	chr4:20552600-20553800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:20552600-20556000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:20552600-20558600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:20552800-20553400	Strong transcription	Brain Anterior Caudate	brain
32	chr4:20552800-20553800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr4:20552800-20555600	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr4:20552800-20556000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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