Variant report

Variant	rs10938800
Chromosome Location	chr4:20584657-20584658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11732845	0.84[EUR][1000 genomes]
rs11732980	0.84[EUR][1000 genomes]
rs1457919	0.81[EUR][1000 genomes]
rs1563657	0.85[EUR][1000 genomes]
rs4697169	0.83[EUR][1000 genomes]
rs504754	0.85[EUR][1000 genomes]
rs506358	0.85[EUR][1000 genomes]
rs571433	0.84[EUR][1000 genomes]
rs575088	0.84[EUR][1000 genomes]
rs587883	0.84[EUR][1000 genomes]
rs6829152	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20492000-20599800	Weak transcription	Aorta	Aorta
2	chr4:20535800-20593600	Weak transcription	Fetal Kidney	kidney
3	chr4:20536800-20618600	Weak transcription	Spleen	Spleen
4	chr4:20555200-20585600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:20555600-20599200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:20556000-20591000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:20567000-20604000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:20567200-20605200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:20567200-20617000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:20571200-20593800	Weak transcription	Osteobl	bone
11	chr4:20574800-20592200	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:20575200-20590800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:20577400-20597200	Weak transcription	Fetal Stomach	stomach
14	chr4:20578000-20617400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr4:20578200-20616800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:20578400-20610000	Weak transcription	Fetal Brain Male	brain
17	chr4:20578600-20594200	Weak transcription	NHLF	lung
18	chr4:20579000-20593600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:20579400-20605600	Weak transcription	Adipose Nuclei	Adipose
20	chr4:20582000-20586400	Strong transcription	Fetal Lung	lung
21	chr4:20583400-20589200	Weak transcription	NHDF-Ad	bronchial
22	chr4:20584000-20586400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:20584200-20585600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:20584200-20590600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:20584200-20600200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:20584400-20591200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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