Variant report

Variant	rs1870261
Chromosome Location	chr4:20566932-20566933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10516357	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs10516358	0.89[JPT][hapmap]
rs11732845	0.84[ASN][1000 genomes]
rs11732980	0.83[ASN][1000 genomes]
rs12501870	0.89[EUR][1000 genomes]
rs12506323	0.89[EUR][1000 genomes]
rs13148960	0.89[EUR][1000 genomes]
rs1457919	0.84[ASN][1000 genomes]
rs1463463	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs17620615	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs1870260	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2168802	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs2290749	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2290750	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2290751	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2292439	0.83[ASN][1000 genomes]
rs34230344	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34337410	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34529351	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4697169	0.83[ASN][1000 genomes]
rs511804	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs540146	0.89[EUR][1000 genomes]
rs56350231	0.89[EUR][1000 genomes]
rs571433	0.84[ASN][1000 genomes]
rs575088	0.84[ASN][1000 genomes]
rs587883	0.84[ASN][1000 genomes]
rs606524	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs61790681	0.87[EUR][1000 genomes]
rs61790682	0.87[EUR][1000 genomes]
rs61790683	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6813991	0.89[JPT][hapmap]
rs6827219	0.89[CEU][hapmap];0.89[JPT][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6847226	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs6851432	0.81[ASN][1000 genomes]
rs6853061	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7655615	0.87[EUR][1000 genomes]
rs7692811	0.88[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases
2	nsv964246	chr4:20565331-20567828	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20492000-20599800	Weak transcription	Aorta	Aorta
2	chr4:20511800-20576200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:20519400-20571000	Weak transcription	Adipose Nuclei	Adipose
4	chr4:20533000-20578000	Weak transcription	NHLF	lung
5	chr4:20533800-20576200	Weak transcription	Left Ventricle	heart
6	chr4:20534800-20576400	Weak transcription	Fetal Brain Male	brain
7	chr4:20535800-20593600	Weak transcription	Fetal Kidney	kidney
8	chr4:20536600-20572200	Weak transcription	Placenta	Placenta
9	chr4:20536800-20618600	Weak transcription	Spleen	Spleen
10	chr4:20547000-20576000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:20549200-20568800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:20553000-20569200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:20554200-20576600	Weak transcription	Fetal Stomach	stomach
14	chr4:20555200-20585600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr4:20555400-20569200	Weak transcription	Osteobl	bone
16	chr4:20555600-20599200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:20556000-20591000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:20558600-20567000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr4:20559400-20568200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:20560000-20567400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:20560000-20583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:20561000-20567000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:20561000-20568600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:20561400-20567800	Weak transcription	NHDF-Ad	bronchial
25	chr4:20566000-20569000	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:20566400-20567200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr4:20566400-20567200	Enhancers	Fetal Lung	lung
28	chr4:20566600-20567000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:20566600-20567000	Enhancers	HMEC	breast
30	chr4:20566800-20567000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:20566800-20567000	Enhancers	NHEK	skin
32	chr4:20566800-20567200	Enhancers	Rectal Smooth Muscle	rectum
33	chr4:20566800-20567400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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