Variant report

Variant	rs10516358
Chromosome Location	chr4:20577107-20577108
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10030885	0.97[ASN][1000 genomes]
rs11936468	0.88[CHD][hapmap]
rs11944759	0.85[EUR][1000 genomes]
rs12647264	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463463	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16869776	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[EUR][1000 genomes]
rs1870260	1.00[CEU][hapmap];0.88[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1870261	0.89[JPT][hapmap]
rs2168802	0.96[CHD][hapmap];1.00[JPT][hapmap]
rs2290749	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2290750	0.92[CHD][hapmap];0.89[JPT][hapmap]
rs2290751	0.88[CHD][hapmap];0.89[JPT][hapmap]
rs34230344	0.91[ASN][1000 genomes]
rs34529351	0.92[ASN][1000 genomes]
rs3756152	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886678	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4466041	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4697171	0.85[EUR][1000 genomes]
rs506358	0.84[CHD][hapmap]
rs606524	0.86[CHB][hapmap]
rs61790683	0.92[ASN][1000 genomes]
rs636798	0.88[CHD][hapmap]
rs6813991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6827219	1.00[JPT][hapmap]
rs6847226	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs7683520	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7692811	0.87[ASW][hapmap];1.00[CEU][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9291411	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20492000-20599800	Weak transcription	Aorta	Aorta
2	chr4:20533000-20578000	Weak transcription	NHLF	lung
3	chr4:20535800-20593600	Weak transcription	Fetal Kidney	kidney
4	chr4:20536800-20618600	Weak transcription	Spleen	Spleen
5	chr4:20555200-20585600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:20555600-20599200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:20556000-20591000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:20560000-20583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:20567000-20581800	Weak transcription	NHEK	skin
10	chr4:20567000-20604000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:20567200-20605200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr4:20567200-20617000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:20570000-20578600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:20571200-20593800	Weak transcription	Osteobl	bone
15	chr4:20572800-20582200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:20574400-20577600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:20574800-20577600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:20574800-20592200	Weak transcription	Colon Smooth Muscle	Colon
19	chr4:20575000-20577200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:20575200-20590800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr4:20576000-20578400	Enhancers	Fetal Brain Female	brain
22	chr4:20576200-20578200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:20576200-20579800	Enhancers	Fetal Lung	lung
24	chr4:20576400-20577800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:20576400-20578400	Enhancers	Fetal Brain Male	brain
26	chr4:20576600-20577200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr4:20576600-20577400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:20576600-20577400	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr4:20576600-20577400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr4:20576600-20577400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:20576600-20577400	Enhancers	Fetal Stomach	stomach
32	chr4:20576600-20578000	Strong transcription	NHDF-Ad	bronchial
33	chr4:20576800-20577200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr4:20576800-20577600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr4:20576800-20577600	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr4:20577000-20577400	Enhancers	H9 Cell Line	embryonic stem cell
37	chr4:20577000-20577400	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr4:20577000-20577400	Enhancers	Brain Germinal Matrix	brain

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