Variant report

Variant	rs3886678
Chromosome Location	chr4:20572036-20572037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10030885	0.82[ASN][1000 genomes]
rs10516358	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11936468	0.87[ASN][1000 genomes]
rs11944759	0.85[EUR][1000 genomes]
rs12647264	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1463463	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16869776	0.85[EUR][1000 genomes]
rs1870260	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2290749	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2290750	0.88[ASN][1000 genomes]
rs2290751	0.91[ASN][1000 genomes]
rs34337410	0.91[ASN][1000 genomes]
rs3756152	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4466041	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4697171	0.85[EUR][1000 genomes]
rs606524	0.92[ASN][1000 genomes]
rs636798	0.86[ASN][1000 genomes]
rs6813991	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6847226	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6853061	0.91[ASN][1000 genomes]
rs7683520	0.85[EUR][1000 genomes]
rs7692811	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20492000-20599800	Weak transcription	Aorta	Aorta
2	chr4:20511800-20576200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:20533000-20578000	Weak transcription	NHLF	lung
4	chr4:20533800-20576200	Weak transcription	Left Ventricle	heart
5	chr4:20534800-20576400	Weak transcription	Fetal Brain Male	brain
6	chr4:20535800-20593600	Weak transcription	Fetal Kidney	kidney
7	chr4:20536600-20572200	Weak transcription	Placenta	Placenta
8	chr4:20536800-20618600	Weak transcription	Spleen	Spleen
9	chr4:20547000-20576000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:20554200-20576600	Weak transcription	Fetal Stomach	stomach
11	chr4:20555200-20585600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:20555600-20599200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr4:20556000-20591000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:20560000-20583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:20567000-20574200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:20567000-20581800	Weak transcription	NHEK	skin
17	chr4:20567000-20604000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:20567200-20605200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:20567200-20617000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:20567400-20572800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:20567600-20572400	Strong transcription	Fetal Lung	lung
22	chr4:20567800-20574800	Strong transcription	NHDF-Ad	bronchial
23	chr4:20568600-20573000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:20569600-20572800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:20569600-20574200	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:20569600-20574400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:20570000-20578600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:20571200-20593800	Weak transcription	Osteobl	bone

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