Variant report

Variant	rs3756152
Chromosome Location	chr4:20582574-20582575
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10030885	0.97[ASN][1000 genomes]
rs10516358	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12647264	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463463	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16869776	0.82[AMR][1000 genomes]
rs1870260	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2290749	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34230344	0.91[ASN][1000 genomes]
rs34529351	0.92[ASN][1000 genomes]
rs3886678	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4466041	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61790683	0.92[ASN][1000 genomes]
rs6813991	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6847226	0.91[AMR][1000 genomes]
rs7692811	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9291411	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20492000-20599800	Weak transcription	Aorta	Aorta
2	chr4:20535800-20593600	Weak transcription	Fetal Kidney	kidney
3	chr4:20536800-20618600	Weak transcription	Spleen	Spleen
4	chr4:20555200-20585600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:20555600-20599200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:20556000-20591000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:20560000-20583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:20567000-20604000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:20567200-20605200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr4:20567200-20617000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:20571200-20593800	Weak transcription	Osteobl	bone
12	chr4:20574800-20592200	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:20575200-20590800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:20577400-20597200	Weak transcription	Fetal Stomach	stomach
15	chr4:20578000-20617400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:20578200-20616800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:20578400-20610000	Weak transcription	Fetal Brain Male	brain
18	chr4:20578600-20594200	Weak transcription	NHLF	lung
19	chr4:20579000-20593600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:20579400-20605600	Weak transcription	Adipose Nuclei	Adipose
21	chr4:20581800-20584200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:20582000-20583400	Strong transcription	NHDF-Ad	bronchial
23	chr4:20582000-20586400	Strong transcription	Fetal Lung	lung
24	chr4:20582200-20582600	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr4:20582200-20582600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr4:20582200-20583200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr4:20582200-20584200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:20582400-20584000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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