Variant report

Variant	rs61790682
Chromosome Location	chr4:20576248-20576249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10516357	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501870	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12506323	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132881	1.00[ASN][1000 genomes]
rs13148960	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17620615	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17620814	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1870261	0.87[EUR][1000 genomes]
rs2290750	0.87[EUR][1000 genomes]
rs2290751	0.87[EUR][1000 genomes]
rs34230344	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34337410	0.88[EUR][1000 genomes]
rs34443398	1.00[ASN][1000 genomes]
rs34529351	0.91[EUR][1000 genomes]
rs34830832	1.00[ASN][1000 genomes]
rs511804	0.88[EUR][1000 genomes]
rs540146	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56350231	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61790681	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61790683	0.91[EUR][1000 genomes]
rs6827219	0.88[EUR][1000 genomes]
rs6853061	0.88[EUR][1000 genomes]
rs7655615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20492000-20599800	Weak transcription	Aorta	Aorta
2	chr4:20533000-20578000	Weak transcription	NHLF	lung
3	chr4:20534800-20576400	Weak transcription	Fetal Brain Male	brain
4	chr4:20535800-20593600	Weak transcription	Fetal Kidney	kidney
5	chr4:20536800-20618600	Weak transcription	Spleen	Spleen
6	chr4:20554200-20576600	Weak transcription	Fetal Stomach	stomach
7	chr4:20555200-20585600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:20555600-20599200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:20556000-20591000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:20560000-20583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:20567000-20581800	Weak transcription	NHEK	skin
12	chr4:20567000-20604000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:20567200-20605200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr4:20567200-20617000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:20570000-20578600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:20571200-20593800	Weak transcription	Osteobl	bone
17	chr4:20572800-20582200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:20574400-20577600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:20574800-20576600	Weak transcription	NHDF-Ad	bronchial
20	chr4:20574800-20577600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:20574800-20592200	Weak transcription	Colon Smooth Muscle	Colon
22	chr4:20575000-20576800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr4:20575000-20577200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr4:20575200-20576400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:20575200-20576600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:20575200-20576600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr4:20575200-20576600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr4:20575200-20576600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:20575200-20576800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr4:20575200-20576800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr4:20575200-20590800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr4:20575400-20576600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr4:20575400-20577000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr4:20576000-20578400	Enhancers	Fetal Brain Female	brain
35	chr4:20576200-20578200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:20576200-20579800	Enhancers	Fetal Lung	lung

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