The 2.0 version of rSNPBase

Variant report

Variant rs3776725
Chromosome Location chr5:53290138-53290139
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:34 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:53253600-53294800 Weak transcription Primary B cells from cord blood blood
2 chr5:53256800-53310000 Weak transcription Primary T cells from cord blood blood
3 chr5:53285600-53291400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr5:53286400-53290200 Weak transcription iPS-18 Cell Line embryonic stem cell
5 chr5:53289000-53290600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
6 chr5:53289000-53290600 Enhancers NHLF lung
7 chr5:53289200-53290600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr5:53289200-53290600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
9 chr5:53289200-53290600 Enhancers HMEC breast
10 chr5:53289200-53291000 Enhancers ES-I3 Cell Line embryonic stem cell
11 chr5:53289400-53290200 Enhancers ES-WA7 Cell Line embryonic stem cell
12 chr5:53289400-53290200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr5:53289400-53290600 Enhancers HUES6 Cell Line embryonic stem cell
14 chr5:53289400-53290600 Enhancers HSMMtube muscle
15 chr5:53289400-53290600 Enhancers NHEK skin
16 chr5:53289400-53290600 Enhancers Osteobl bone
17 chr5:53289400-53290800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr5:53289400-53291800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr5:53289600-53290400 Enhancers HUES64 Cell Line embryonic stem cell
20 chr5:53289600-53290400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr5:53289600-53290600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr5:53289600-53290600 Enhancers Primary monocytes fromperipheralblood blood
23 chr5:53289600-53290600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr5:53289600-53290600 Enhancers Muscle Satellite Cultured Cells --
25 chr5:53289600-53290600 Enhancers Hela-S3 cervix
26 chr5:53289600-53290600 Enhancers K562 blood
27 chr5:53289600-53290600 Enhancers Monocytes-CD14+_RO01746 blood
28 chr5:53289600-53290600 Enhancers NHDF-Ad bronchial
29 chr5:53289600-53291600 Enhancers iPS-15b Cell Line embryonic stem cell
30 chr5:53289800-53290400 Enhancers A549 lung
31 chr5:53289800-53293400 Weak transcription H1 Cell Line embryonic stem cell
32 chr5:53290000-53290400 Weak transcription iPS-20b Cell Line embryonic stem cell
33 chr5:53290000-53290600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr5:53290000-53290600 Enhancers HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015