The 2.0 version of rSNPBase

Variant report

Variant rs3822499
Chromosome Location chr5:53289459-53289460
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:53253600-53294800 Weak transcription Primary B cells from cord blood blood
2 chr5:53256800-53310000 Weak transcription Primary T cells from cord blood blood
3 chr5:53281200-53290000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr5:53282000-53290000 Weak transcription HUES48 Cell Line embryonic stem cell
5 chr5:53283600-53289600 Weak transcription NHDF-Ad bronchial
6 chr5:53284000-53289600 Weak transcription Fetal Intestine Small intestine
7 chr5:53285600-53291400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr5:53286400-53290200 Weak transcription iPS-18 Cell Line embryonic stem cell
9 chr5:53286600-53289600 Weak transcription iPS-15b Cell Line embryonic stem cell
10 chr5:53286800-53289600 Weak transcription HUES64 Cell Line embryonic stem cell
11 chr5:53288200-53289600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr5:53289000-53290600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
13 chr5:53289000-53290600 Enhancers NHLF lung
14 chr5:53289200-53289800 Enhancers Breast Myoepithelial Primary Cells Breast
15 chr5:53289200-53290600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr5:53289200-53290600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
17 chr5:53289200-53290600 Enhancers HMEC breast
18 chr5:53289200-53291000 Enhancers ES-I3 Cell Line embryonic stem cell
19 chr5:53289400-53290000 Enhancers iPS-20b Cell Line embryonic stem cell
20 chr5:53289400-53290200 Enhancers ES-WA7 Cell Line embryonic stem cell
21 chr5:53289400-53290200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr5:53289400-53290600 Enhancers HUES6 Cell Line embryonic stem cell
23 chr5:53289400-53290600 Enhancers HSMMtube muscle
24 chr5:53289400-53290600 Enhancers NHEK skin
25 chr5:53289400-53290600 Enhancers Osteobl bone
26 chr5:53289400-53290800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr5:53289400-53291800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015