Variant report

Variant	rs3777854
Chromosome Location	chr6:133753078-133753079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10782249	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11154727	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12211899	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1336533	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1926091	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025705	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777849	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3777864	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57243011	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6912844	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs766541	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9373054	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9373055	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375963	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375964	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9385648	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9389077	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389078	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399064	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399065	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9402510	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525971	chr6:133726646-133753825	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133732600-133758200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133746000-133753200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:133749800-133777600	Weak transcription	Hela-S3	cervix
4	chr6:133752000-133753800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:133752000-133753800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:133752000-133754000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:133752200-133753600	Enhancers	Right Atrium	heart
8	chr6:133752200-133753800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:133752200-133754000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:133752200-133754200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:133752200-133754200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:133752400-133753200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:133752400-133754200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:133752400-133754400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:133752400-133754400	Weak transcription	Psoas Muscle	Psoas
16	chr6:133752400-133763400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:133752600-133753400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:133752600-133753800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:133752600-133754000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:133752600-133754000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:133752800-133753200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:133752800-133753400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:133752800-133753600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:133752800-133753800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:133752800-133753800	Enhancers	Fetal Muscle Leg	muscle
26	chr6:133753000-133753200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr6:133753000-133753800	Enhancers	H1 Cell Line	embryonic stem cell

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