Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10782249	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs11154727	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs12211899	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs1336533	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1926091	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2025705	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs3777849	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3777854	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3777864	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs57243011	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6912844	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs766541	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs9373054	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs9373055	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9375963	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9375964	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9385648	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9389077	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9389078	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9399064	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9399065	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025700	chr6:133726264-133748758	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604699	chr6:133726502-133747840	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1019755	chr6:133726502-133748758	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020698	chr6:133726502-133751161	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv525971	chr6:133726646-133753825	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv604700	chr6:133732404-133746497	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
7	esv3473392	chr6:133743959-133749357	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133720200-133748400	Weak transcription	Hela-S3	cervix
2	chr6:133720400-133749600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:133726600-133752200	Weak transcription	Right Atrium	heart
4	chr6:133732600-133758200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:133736400-133752200	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:133737400-133746800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:133742400-133745200	Weak transcription	Pancreas	Pancrea
8	chr6:133742400-133745400	Weak transcription	Psoas Muscle	Psoas
9	chr6:133742400-133745800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:133744000-133748000	Enhancers	Liver	Liver
11	chr6:133744200-133745200	Weak transcription	Gastric	stomach
12	chr6:133744400-133752400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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