Variant report

Variant	rs3778416
Chromosome Location	chr6:166937878-166937879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166932943..166934797-chr6:166936117..166937896,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11968034	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16899101	1.00[JPT][hapmap]
rs2235273	1.00[JPT][hapmap]
rs2344712	1.00[JPT][hapmap]
rs3778410	1.00[JPT][hapmap]
rs3778420	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3778421	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3799638	1.00[JPT][hapmap]
rs3799642	1.00[JPT][hapmap]
rs3799645	1.00[JPT][hapmap]
rs6902908	1.00[AMR][1000 genomes]
rs6929792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1806956	chr6:166928580-166938431	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv605259	chr6:166936021-166952981	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166901000-166954800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:166902200-166954400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:166902600-166952800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:166909600-166943800	Weak transcription	Colonic Mucosa	Colon
5	chr6:166913000-166952000	Weak transcription	Primary T cells from cord blood	blood
6	chr6:166916200-166954200	Weak transcription	Right Atrium	heart
7	chr6:166916400-166940400	Weak transcription	Fetal Heart	heart
8	chr6:166921400-166943600	Weak transcription	Fetal Lung	lung
9	chr6:166923000-166940400	Weak transcription	Aorta	Aorta
10	chr6:166923000-166943800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:166923200-166940200	Weak transcription	Ovary	ovary
12	chr6:166923200-166943200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:166923200-166943800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:166923800-166944400	Weak transcription	Psoas Muscle	Psoas
15	chr6:166923800-166953000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:166925000-166940400	Weak transcription	Adipose Nuclei	Adipose
17	chr6:166927200-166938000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:166928400-166938400	Weak transcription	Right Ventricle	heart
19	chr6:166928800-166943400	Weak transcription	Fetal Brain Female	brain
20	chr6:166929000-166938000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr6:166929000-166943400	Weak transcription	Liver	Liver
22	chr6:166929400-166943000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:166929600-166938200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:166929600-166942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:166929600-166954000	Weak transcription	HSMM	muscle
26	chr6:166929600-166955600	Weak transcription	HMEC	breast
27	chr6:166930200-166944000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:166930400-166938600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:166930400-166940200	Weak transcription	Brain Angular Gyrus	brain
30	chr6:166930400-166940400	Weak transcription	NHDF-Ad	bronchial
31	chr6:166930400-166943000	Weak transcription	Brain Anterior Caudate	brain
32	chr6:166930400-166943800	Weak transcription	Esophagus	oesophagus
33	chr6:166930400-166954200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:166930400-166957800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:166930600-166942800	Weak transcription	Brain Substantia Nigra	brain
36	chr6:166931600-166941600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:166931600-166943200	Weak transcription	Brain Germinal Matrix	brain
38	chr6:166932000-166941400	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr6:166932200-166941800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:166932400-166940400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:166932400-166948600	Weak transcription	Primary B cells from cord blood	blood
42	chr6:166932600-166938200	Weak transcription	HSMMtube	muscle
43	chr6:166932600-166953800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:166933000-166942800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:166933200-166941600	Strong transcription	Lung	lung
46	chr6:166933200-166953200	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr6:166933800-166940000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:166933800-166940600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:166933800-166953400	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr6:166934400-166944000	Weak transcription	Fetal Intestine Large	intestine

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