Variant report

Variant	rs3778812
Chromosome Location	chr7:137447398-137447399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10261368	0.92[CEU][hapmap];0.83[GIH][hapmap]
rs10277480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13221354	0.89[CEU][hapmap]
rs2009990	0.85[CEU][hapmap]
rs2113426	0.85[CEU][hapmap];0.80[GIH][hapmap]
rs2113427	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3778810	1.00[CEU][hapmap];0.95[GIH][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3778811	0.83[ASW][hapmap];0.92[CEU][hapmap];0.83[GIH][hapmap];0.80[EUR][1000 genomes]
rs3778813	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3778815	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3800659	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800660	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4732267	0.92[CEU][hapmap];0.94[CHB][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6467717	0.96[CEU][hapmap];0.89[GIH][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137440600-137453200	Weak transcription	Aorta	Aorta
2	chr7:137441000-137464400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:137442200-137453200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:137442400-137451000	Weak transcription	HSMMtube	muscle
5	chr7:137442400-137453000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:137442400-137453200	Weak transcription	NH-A	brain
7	chr7:137442600-137456200	Weak transcription	HSMM	muscle
8	chr7:137445400-137447600	Strong transcription	Osteobl	bone
9	chr7:137445600-137447400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:137446200-137450400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:137447200-137452600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links