Variant report

Variant	rs4732267
Chromosome Location	chr7:137457120-137457121
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10261368	0.84[CEU][hapmap]
rs10277480	0.92[CEU][hapmap];0.94[CHB][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13221354	0.80[CEU][hapmap]
rs2009990	0.84[CEU][hapmap]
rs2113427	0.84[CEU][hapmap];0.94[CHB][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3778810	0.92[CEU][hapmap];0.84[GIH][hapmap];0.85[EUR][1000 genomes]
rs3778811	0.84[CEU][hapmap]
rs3778812	0.92[CEU][hapmap];0.94[CHB][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3778813	0.92[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3778815	0.92[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3800659	0.88[CEU][hapmap];0.89[CHB][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3800660	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs6467717	0.96[CEU][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv511992	chr7:137453319-137457163	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137441000-137464400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:137453400-137459000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:137453600-137457400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:137453600-137457600	Weak transcription	Brain Angular Gyrus	brain
5	chr7:137453800-137457400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:137454000-137457600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:137454000-137457600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:137454000-137459200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:137454000-137459200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:137454000-137459200	Weak transcription	Aorta	Aorta
11	chr7:137454000-137459400	Weak transcription	Esophagus	oesophagus
12	chr7:137455800-137457400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:137455800-137458200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:137455800-137460400	Enhancers	NHDF-Ad	bronchial
15	chr7:137455800-137461000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:137456000-137458600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:137456000-137459600	Enhancers	HSMMtube	muscle
18	chr7:137456200-137459400	Enhancers	HSMM	muscle
19	chr7:137456400-137458200	Enhancers	Brain Hippocampus Middle	brain
20	chr7:137456400-137458400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:137456400-137458400	Enhancers	Brain Anterior Caudate	brain
22	chr7:137456400-137458400	Enhancers	NHEK	skin
23	chr7:137456400-137458800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:137456600-137457400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:137456600-137457400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:137456600-137457400	Flanking Active TSS	NH-A	brain
27	chr7:137456600-137457600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:137456600-137457600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr7:137456600-137458200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr7:137456600-137458200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:137456600-137458400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:137456600-137459600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr7:137456600-137459800	Enhancers	NHLF	lung
34	chr7:137456800-137457800	Weak transcription	Adipose Nuclei	Adipose
35	chr7:137456800-137458800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr7:137457000-137457400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr7:137457000-137457800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr7:137457000-137458400	Enhancers	HMEC	breast
39	chr7:137457000-137458400	Enhancers	HUVEC	blood vessel
40	chr7:137457000-137460400	Enhancers	Osteobl	bone

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