Variant report

Variant	rs3779998
Chromosome Location	chr8:59735489-59735490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10103680	0.88[CEU][hapmap]
rs10504264	0.92[CHB][hapmap]
rs13251536	0.90[CEU][hapmap]
rs13262120	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16924069	0.90[CEU][hapmap]
rs16924095	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs16924124	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs2122015	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs3779999	0.92[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.91[ASN][1000 genomes]
rs3780000	0.90[CEU][hapmap]
rs55914621	0.83[EUR][1000 genomes]
rs57569962	0.91[ASN][1000 genomes]
rs61049278	0.91[ASN][1000 genomes]
rs6471753	0.91[ASN][1000 genomes]
rs6471754	0.83[CEU][hapmap]
rs6992117	0.84[CHB][hapmap]
rs6999284	0.92[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7008234	0.92[CHB][hapmap]
rs72649453	0.80[EUR][1000 genomes]
rs73243052	0.89[ASN][1000 genomes]
rs73243060	0.91[ASN][1000 genomes]
rs7817609	0.92[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7820385	0.92[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7826293	0.92[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59714600-59746000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:59715000-59735600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:59715000-59742400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:59715200-59757400	Weak transcription	Fetal Intestine Large	intestine
5	chr8:59720600-59736800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:59720600-59738200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr8:59720600-59754800	Weak transcription	Small Intestine	intestine
8	chr8:59720800-59739000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:59720800-59745200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr8:59720800-59762600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:59721000-59739000	Weak transcription	NHLF	lung
12	chr8:59721000-59739200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:59721000-59745000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr8:59721400-59745000	Weak transcription	Fetal Brain Male	brain
15	chr8:59721600-59736400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr8:59721600-59736800	Weak transcription	Brain Germinal Matrix	brain
17	chr8:59721600-59745400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr8:59722000-59737800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:59722400-59757200	Strong transcription	Dnd41	blood
20	chr8:59724600-59738800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr8:59727000-59745400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr8:59728200-59736200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr8:59728200-59736400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:59728400-59736000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr8:59728400-59741600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr8:59728400-59741600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr8:59729600-59736200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr8:59729600-59736200	Weak transcription	Fetal Intestine Small	intestine
29	chr8:59729600-59736200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr8:59729600-59736400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr8:59729600-59739000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr8:59729600-59740000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr8:59729600-59754800	Weak transcription	Gastric	stomach
34	chr8:59729800-59736200	Weak transcription	Fetal Stomach	stomach
35	chr8:59729800-59739000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr8:59730200-59736000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr8:59730200-59736600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr8:59730200-59739800	Weak transcription	Fetal Lung	lung
39	chr8:59730800-59770800	Strong transcription	Fetal Thymus	thymus
40	chr8:59731200-59738000	Weak transcription	NHDF-Ad	bronchial
41	chr8:59731400-59735600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr8:59732000-59745000	Weak transcription	Fetal Kidney	kidney
43	chr8:59732200-59755200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr8:59733600-59739200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr8:59734000-59740000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr8:59734000-59745200	Weak transcription	Fetal Brain Female	brain
47	chr8:59734200-59739200	Weak transcription	HUVEC	blood vessel
48	chr8:59734200-59739600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr8:59734800-59740200	Strong transcription	Primary T cells from cord blood	blood
50	chr8:59735000-59735600	Enhancers	Colon Smooth Muscle	Colon

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