Variant report

Variant	rs6471754
Chromosome Location	chr8:59754367-59754368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59753038..59755969-chr8:59757375..59759346,3	K562	blood:
2	chr8:59753701..59756269-chr8:59757375..59760219,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10090233	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10099884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251536	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262120	0.81[CEU][hapmap]
rs16924032	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16924069	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924102	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16924122	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34855090	0.89[EUR][1000 genomes]
rs3779998	0.83[CEU][hapmap]
rs3780000	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72649459	0.89[EUR][1000 genomes]
rs7813495	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7817609	0.92[CEU][hapmap]
rs7821556	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs826730	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59715200-59757400	Weak transcription	Fetal Intestine Large	intestine
2	chr8:59720600-59754800	Weak transcription	Small Intestine	intestine
3	chr8:59720800-59762600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:59722400-59757200	Strong transcription	Dnd41	blood
5	chr8:59729600-59754800	Weak transcription	Gastric	stomach
6	chr8:59730800-59770800	Strong transcription	Fetal Thymus	thymus
7	chr8:59732200-59755200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:59745600-59770800	Weak transcription	Fetal Kidney	kidney
9	chr8:59745800-59770800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:59746400-59773200	Weak transcription	Fetal Intestine Small	intestine
11	chr8:59746600-59754800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:59746600-59763600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:59746800-59763600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr8:59747000-59755000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr8:59747000-59755800	Weak transcription	Fetal Lung	lung
16	chr8:59747000-59757600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr8:59747200-59754800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr8:59747400-59754400	Weak transcription	NH-A	brain
19	chr8:59747400-59754400	Weak transcription	Osteobl	bone
20	chr8:59747400-59754600	Weak transcription	NHLF	lung
21	chr8:59747400-59755200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:59747400-59757800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr8:59747400-59760400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:59747400-59770800	Weak transcription	Pancreas	Pancrea
25	chr8:59747600-59754400	Weak transcription	NHDF-Ad	bronchial
26	chr8:59747600-59754600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr8:59749200-59757600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr8:59749200-59762600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr8:59750800-59754600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:59750800-59754600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr8:59750800-59757600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr8:59750800-59760000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:59750800-59761800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr8:59750800-59762600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr8:59750800-59771000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr8:59751000-59754400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr8:59751000-59754400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr8:59751000-59755000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr8:59751000-59756400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr8:59751000-59761600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:59751000-59763400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr8:59751200-59755000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr8:59751400-59754800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr8:59752200-59756400	Strong transcription	Primary T cells from cord blood	blood
45	chr8:59752400-59757600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr8:59753000-59755600	Enhancers	Hela-S3	cervix
47	chr8:59753200-59756600	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr8:59753600-59754600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr8:59753600-59754800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr8:59753600-59754800	Enhancers	K562	blood

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