Variant report

Variant	rs16924102
Chromosome Location	chr8:59769957-59769958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59766928..59769439-chr8:59769893..59772631,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10088672	1.00[EUR][1000 genomes]
rs10099884	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10103680	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13251536	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1530696	1.00[EUR][1000 genomes]
rs16924032	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16924069	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16924122	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924227	1.00[EUR][1000 genomes]
rs3780000	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs59608513	1.00[EUR][1000 genomes]
rs6471754	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7005521	1.00[EUR][1000 genomes]
rs7015624	1.00[EUR][1000 genomes]
rs73254439	1.00[EUR][1000 genomes]
rs73254487	1.00[EUR][1000 genomes]
rs73686743	1.00[EUR][1000 genomes]
rs7813495	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7821556	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7824317	1.00[EUR][1000 genomes]
rs7845594	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59730800-59770800	Strong transcription	Fetal Thymus	thymus
2	chr8:59745600-59770800	Weak transcription	Fetal Kidney	kidney
3	chr8:59745800-59770800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:59746400-59773200	Weak transcription	Fetal Intestine Small	intestine
5	chr8:59747400-59770800	Weak transcription	Pancreas	Pancrea
6	chr8:59750800-59771000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:59755600-59770400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:59755800-59772200	Weak transcription	Small Intestine	intestine
9	chr8:59758400-59777400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr8:59759600-59770200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:59760400-59770800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:59761000-59777200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr8:59761200-59770800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr8:59762000-59770800	Weak transcription	Colon Smooth Muscle	Colon
15	chr8:59763000-59771000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr8:59763000-59771200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:59763200-59771000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:59763400-59770200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:59763400-59771000	Weak transcription	Fetal Intestine Large	intestine
20	chr8:59764000-59770000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:59764200-59770200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr8:59764200-59770400	Weak transcription	Primary T cells from cord blood	blood
23	chr8:59764200-59770800	Weak transcription	Fetal Lung	lung
24	chr8:59764200-59771200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr8:59764200-59771200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr8:59764200-59771800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr8:59764200-59777600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr8:59764200-59806400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr8:59764400-59770000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr8:59764400-59770200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:59764400-59770200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr8:59764400-59770400	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr8:59764400-59770400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr8:59764400-59770800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr8:59764400-59771000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr8:59764400-59771000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr8:59764400-59771000	Weak transcription	Esophagus	oesophagus
38	chr8:59764400-59771000	Weak transcription	Gastric	stomach
39	chr8:59764400-59771000	Weak transcription	Thymus	Thymus
40	chr8:59766800-59770800	Enhancers	NHDF-Ad	bronchial
41	chr8:59767000-59770400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr8:59767000-59771600	Enhancers	NHLF	lung
43	chr8:59767000-59773800	Enhancers	HSMM	muscle
44	chr8:59767200-59770800	Enhancers	Muscle Satellite Cultured Cells	--
45	chr8:59768000-59770800	Enhancers	NHEK	skin
46	chr8:59768000-59771000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr8:59768000-59773600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:59768200-59770200	Enhancers	Hela-S3	cervix
49	chr8:59768200-59770800	Enhancers	Osteobl	bone
50	chr8:59768200-59771600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links