Variant report

Variant	rs1530696
Chromosome Location	chr8:59855290-59855291
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59855187..59857274-chr8:59861069..59862885,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10088672	1.00[EUR][1000 genomes]
rs11987441	1.00[EUR][1000 genomes]
rs16924032	1.00[EUR][1000 genomes]
rs16924102	1.00[EUR][1000 genomes]
rs16924122	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16924227	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59608513	1.00[EUR][1000 genomes]
rs6981360	1.00[EUR][1000 genomes]
rs7005521	0.87[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7015624	1.00[EUR][1000 genomes]
rs73254439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73254487	1.00[EUR][1000 genomes]
rs73256333	1.00[EUR][1000 genomes]
rs73256354	1.00[EUR][1000 genomes]
rs73686743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7824317	0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7845594	1.00[EUR][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:59831200-59860200	Weak transcription	Gastric	stomach
3	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine
6	chr8:59839600-59857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:59841000-59858000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:59841000-59859000	Weak transcription	Fetal Intestine Small	intestine
9	chr8:59841000-59861800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:59843800-59863600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:59847000-59857800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:59847200-59856000	Weak transcription	NHDF-Ad	bronchial
13	chr8:59847400-59858000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:59847600-59857400	Weak transcription	HUVEC	blood vessel
15	chr8:59847600-59860400	Weak transcription	Small Intestine	intestine
16	chr8:59847800-59860600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:59849000-59858000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr8:59849000-59861000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr8:59849800-59857800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr8:59850000-59858000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:59850800-59860600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
23	chr8:59852000-59858400	Weak transcription	Colon Smooth Muscle	Colon
24	chr8:59852000-59861400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr8:59852000-59862600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr8:59852000-59871200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr8:59852000-59875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr8:59852200-59855400	Weak transcription	Fetal Brain Female	brain
30	chr8:59852200-59856400	Weak transcription	Fetal Stomach	stomach
31	chr8:59852200-59858000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:59852200-59858000	Weak transcription	Osteobl	bone
33	chr8:59852200-59861200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr8:59852200-59861400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr8:59852200-59866800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr8:59852200-59866800	Weak transcription	Thymus	Thymus
37	chr8:59852200-59871800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr8:59852200-59874200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr8:59852400-59858000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr8:59852400-59875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:59852400-59875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr8:59852600-59856600	Weak transcription	Primary T cells from cord blood	blood
43	chr8:59852600-59861000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr8:59853400-59855600	Weak transcription	Fetal Thymus	thymus
46	chr8:59853400-59857400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr8:59854000-59855400	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links