Variant report

Variant	rs16924032
Chromosome Location	chr8:59734979-59734980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10088672	1.00[EUR][1000 genomes]
rs10099884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10103680	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13251536	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1530696	1.00[EUR][1000 genomes]
rs16924069	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16924102	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16924122	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16924227	1.00[EUR][1000 genomes]
rs3780000	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6471754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7005521	1.00[EUR][1000 genomes]
rs73254439	1.00[EUR][1000 genomes]
rs73686743	1.00[EUR][1000 genomes]
rs7813495	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7821556	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7824317	1.00[EUR][1000 genomes]
rs7845594	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59714600-59746000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:59715000-59735600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:59715000-59742400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:59715200-59757400	Weak transcription	Fetal Intestine Large	intestine
5	chr8:59720600-59736800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:59720600-59738200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr8:59720600-59754800	Weak transcription	Small Intestine	intestine
8	chr8:59720800-59739000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:59720800-59745200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr8:59720800-59762600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:59721000-59735000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr8:59721000-59739000	Weak transcription	NHLF	lung
13	chr8:59721000-59739200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:59721000-59745000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr8:59721400-59745000	Weak transcription	Fetal Brain Male	brain
16	chr8:59721600-59736400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr8:59721600-59736800	Weak transcription	Brain Germinal Matrix	brain
18	chr8:59721600-59745400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr8:59722000-59737800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:59722400-59757200	Strong transcription	Dnd41	blood
21	chr8:59724600-59738800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr8:59727000-59745400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:59728200-59736200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr8:59728200-59736400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr8:59728400-59736000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr8:59728400-59741600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:59728400-59741600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr8:59728600-59735400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr8:59729600-59736200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr8:59729600-59736200	Weak transcription	Fetal Intestine Small	intestine
31	chr8:59729600-59736200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr8:59729600-59736400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr8:59729600-59739000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:59729600-59740000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr8:59729600-59754800	Weak transcription	Gastric	stomach
36	chr8:59729800-59735000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr8:59729800-59736200	Weak transcription	Fetal Stomach	stomach
38	chr8:59729800-59739000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr8:59730200-59736000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr8:59730200-59736600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr8:59730200-59739800	Weak transcription	Fetal Lung	lung
42	chr8:59730800-59770800	Strong transcription	Fetal Thymus	thymus
43	chr8:59731200-59735000	Weak transcription	Thymus	Thymus
44	chr8:59731200-59738000	Weak transcription	NHDF-Ad	bronchial
45	chr8:59731400-59735600	Weak transcription	Primary hematopoietic stem cells	blood
46	chr8:59732000-59745000	Weak transcription	Fetal Kidney	kidney
47	chr8:59732200-59755200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr8:59733600-59739200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr8:59733800-59735000	Weak transcription	Colon Smooth Muscle	Colon
50	chr8:59734000-59735200	Enhancers	Duodenum Smooth Muscle	Duodenum

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