Variant report

Variant	rs3781901
Chromosome Location	chr11:57121330-57121331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57110145..57111927-chr11:57119276..57121800,2	K562	blood:
2	chr11:57120084..57121801-chr11:57123395..57125766,2	K562	blood:
3	chr11:57111944..57114870-chr11:57120183..57122061,2	K562	blood:
4	chr11:57119644..57122336-chr11:57124896..57127727,2	K562	blood:
5	chr11:57119177..57122088-chr11:57123742..57126418,2	MCF-7	breast:
6	chr11:57109658..57111927-chr11:57120300..57122314,2	K562	blood:
7	chr11:57120084..57121849-chr11:57122754..57124895,2	K562	blood:

Variant related genes	Relation type
ENSG00000266018	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10732882	0.81[ASN][1000 genomes]
rs10736683	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10750859	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896610	0.89[ASN][1000 genomes]
rs1837974	0.91[ASN][1000 genomes]
rs2003065	0.91[ASN][1000 genomes]
rs2276042	0.89[ASN][1000 genomes]
rs3781902	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4570598	0.91[ASN][1000 genomes]
rs4939138	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55637147	0.81[ASN][1000 genomes]
rs56077100	0.91[ASN][1000 genomes]
rs879646	0.91[ASN][1000 genomes]
rs9667065	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57117400-57122000	Weak transcription	Pancreas	Pancrea
2	chr11:57117600-57122000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:57117600-57126400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:57117600-57140000	Weak transcription	Right Atrium	heart
5	chr11:57117800-57122000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:57117800-57122000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:57119400-57123600	Weak transcription	A549	lung
8	chr11:57119800-57124800	Enhancers	Fetal Brain Male	brain
9	chr11:57120000-57121600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:57120000-57121600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:57120000-57126600	Enhancers	Primary hematopoietic stem cells	blood
12	chr11:57120000-57126800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:57120200-57122600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:57120200-57123400	Enhancers	Fetal Brain Female	brain
15	chr11:57120200-57123400	Enhancers	Fetal Muscle Leg	muscle
16	chr11:57120400-57121600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr11:57120400-57122000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:57120400-57122000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:57120600-57121400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:57120600-57121400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr11:57120600-57121400	Flanking Active TSS	K562	blood
22	chr11:57120600-57121600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr11:57120800-57121400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr11:57120800-57121600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr11:57120800-57122000	Enhancers	Brain Substantia Nigra	brain
26	chr11:57120800-57122000	Enhancers	Fetal Stomach	stomach
27	chr11:57121000-57121400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:57121000-57122600	Enhancers	Brain Hippocampus Middle	brain
29	chr11:57121000-57124400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr11:57121200-57121400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:57121200-57122200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr11:57121200-57126400	Weak transcription	H1 Cell Line	embryonic stem cell

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