Variant report

Variant	rs3782988
Chromosome Location	chr13:98030452-98030453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2892853	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3782987	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7318623	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7335585	0.95[ASN][1000 genomes]
rs9516913	0.82[EUR][1000 genomes]
rs9516919	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9584562	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9805513	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
2	chr13:98002400-98039600	Weak transcription	Spleen	Spleen
3	chr13:98015200-98036600	Weak transcription	Fetal Heart	heart
4	chr13:98020000-98045600	Weak transcription	Hela-S3	cervix
5	chr13:98020200-98046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:98020400-98048000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:98020800-98031000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:98022000-98036600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr13:98022000-98038600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr13:98022000-98039000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr13:98022000-98043400	Weak transcription	Stomach Mucosa	stomach
12	chr13:98022000-98045600	Weak transcription	Colonic Mucosa	Colon
13	chr13:98022000-98048000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr13:98022200-98033000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr13:98022200-98037200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr13:98022200-98038200	Weak transcription	Dnd41	blood
17	chr13:98022200-98038600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr13:98022200-98042600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr13:98022600-98043800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr13:98023200-98035600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr13:98023400-98041600	Strong transcription	Liver	Liver
22	chr13:98023600-98031000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr13:98023600-98035600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr13:98023600-98045400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr13:98024000-98044600	Weak transcription	GM12878-XiMat	blood
26	chr13:98025000-98039200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr13:98025800-98033200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr13:98025800-98034400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr13:98026400-98045200	Weak transcription	Fetal Brain Male	brain
30	chr13:98026800-98030800	Strong transcription	Fetal Intestine Large	intestine
31	chr13:98026800-98041200	Strong transcription	HepG2	liver
32	chr13:98027200-98040400	Strong transcription	Fetal Lung	lung
33	chr13:98027600-98032600	Weak transcription	Brain Angular Gyrus	brain
34	chr13:98027600-98033000	Weak transcription	Thymus	Thymus
35	chr13:98027800-98031200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr13:98027800-98037200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr13:98027800-98043800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr13:98027800-98044000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr13:98027800-98048000	Weak transcription	K562	blood
40	chr13:98028000-98033000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr13:98028000-98038400	Weak transcription	Fetal Thymus	thymus
42	chr13:98028000-98038400	Weak transcription	NHEK	skin
43	chr13:98028000-98056400	Weak transcription	Psoas Muscle	Psoas
44	chr13:98028200-98033000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr13:98028200-98036600	Weak transcription	Gastric	stomach
46	chr13:98028200-98038400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr13:98028200-98046200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr13:98028200-98048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr13:98028200-98048000	Weak transcription	Fetal Kidney	kidney
50	chr13:98028400-98032000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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