Variant report

Variant	rs9516919
Chromosome Location	chr13:98021849-98021850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2892853	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3782987	0.83[ASN][1000 genomes]
rs3782988	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7318623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335585	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9584562	0.91[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9805513	0.92[CEU][hapmap];0.90[CHB][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
2	chr13:98002400-98027200	Weak transcription	Lung	lung
3	chr13:98002400-98039600	Weak transcription	Spleen	Spleen
4	chr13:98010000-98027400	Weak transcription	Esophagus	oesophagus
5	chr13:98010800-98027400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr13:98015200-98036600	Weak transcription	Fetal Heart	heart
7	chr13:98015800-98023600	Weak transcription	Gastric	stomach
8	chr13:98017200-98023600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr13:98018400-98025000	Weak transcription	Fetal Brain Male	brain
10	chr13:98020000-98023600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:98020000-98025400	Weak transcription	Pancreas	Pancrea
12	chr13:98020000-98027200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:98020000-98045600	Weak transcription	Hela-S3	cervix
14	chr13:98020200-98023600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:98020200-98023600	Weak transcription	Left Ventricle	heart
16	chr13:98020200-98023600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr13:98020200-98026800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr13:98020200-98046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:98020400-98023600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:98020400-98023600	Weak transcription	HepG2	liver
21	chr13:98020400-98025400	Weak transcription	Fetal Intestine Large	intestine
22	chr13:98020400-98027200	Weak transcription	K562	blood
23	chr13:98020400-98048000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:98020600-98023400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr13:98020600-98023600	Weak transcription	Fetal Stomach	stomach
26	chr13:98020800-98023800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr13:98020800-98031000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr13:98021000-98022200	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr13:98021200-98022000	Active TSS	Aorta	Aorta
30	chr13:98021200-98022000	Active TSS	Psoas Muscle	Psoas
31	chr13:98021200-98022000	Active TSS	Rectal Smooth Muscle	rectum
32	chr13:98021200-98022000	Active TSS	Right Atrium	heart
33	chr13:98021200-98022000	Active TSS	Stomach Smooth Muscle	stomach
34	chr13:98021200-98022000	Active TSS	A549	lung
35	chr13:98021200-98022200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr13:98021200-98022200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr13:98021200-98022200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr13:98021200-98022200	Active TSS	Colon Smooth Muscle	Colon
39	chr13:98021200-98022200	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr13:98021200-98022200	Active TSS	HMEC	breast
41	chr13:98021400-98022000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr13:98021400-98022000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr13:98021400-98022000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr13:98021400-98022000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
45	chr13:98021400-98022000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
46	chr13:98021400-98022000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr13:98021400-98022000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr13:98021400-98022000	Active TSS	Primary T killer memory cells from peripheral blood	blood
49	chr13:98021400-98022000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr13:98021400-98022000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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